Browse Element(s) Details


Os.8858.1.S1_a_at

Description gb:AK072122.1
DB_XREF= gi:32982145
TID=Os.8858.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123N09, full insert sequence.
FL= gb:AK072122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5085011/11BAH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8858.1.S1_a_at--231--5051Chr02:31077315..31077339 (25 bp)
GCAGAACGTTCTTCATACAAGCAAT
LOC_Os02g50850
Os.8858.1.S1_a_at--432--8511Chr02:31077345..31077369 (25 bp)
TGGCAATGAGCTTTTAACTGTTATC
LOC_Os02g50850
Os.8858.1.S1_a_at--440--191Chr02:31077377..31077401 (25 bp)
ATTTCACAGTGACTTCAGCTTCCAG
LOC_Os02g50850
Os.8858.1.S1_a_at--193--9471Chr02:31077527..31077551 (25 bp)
TCTGGTGTGTTGCACCCTTGCTGGA
LOC_Os02g50850
Os.8858.1.S1_a_at--136--3451Chr02:31077557..31077581 (25 bp)
CAGTTCATACATGACCCTGTGATGA
LOC_Os02g50850
Os.8858.1.S1_a_at--10--5551Chr02:31077643..31077667 (25 bp)
GAAACATTTTTCCTTGGCTTCAGCA
LOC_Os02g50850
Os.8858.1.S1_a_at--172--3451Chr02:31077666..31077690 (25 bp)
CAGTTGCACTGCTAGATTTTCGTAG
LOC_Os02g50850
Os.8858.1.S1_a_at--392--6971Chr02:31077687..31077711 (25 bp)
GTAGCTGTCAGGCATATGCTTCTAA
LOC_Os02g50850
Os.8858.1.S1_a_at--615--9071Chr02:31077703..31077727 (25 bp)
TGCTTCTAATTTGCTCCGATATGAC
LOC_Os02g50850
Os.8858.1.S1_a_at--1074--9971Chr02:31077744..31077768 (25 bp)
TAGCCGTATAGGTCCTGAGCCACAA
LOC_Os02g50850
Os.8858.1.S1_a_at--353--7071Chr02:31077787..31077811 (25 bp)
GTAATTAGTCCAGCTTGTTTGTTTA
LOC_Os02g50850
Target Sequence 
GCAGAACGTTCTTCATACAAGCAATTATCATGGCAATGAGCTTTTAACTGTTATCATTTCTCATTTCACAGTGACTTCAG
CTTCCAGTGAGCTTGTATGTACTTGTATTCCGTCTCCAACAACCTGCTTGTTTCTCACTTGCAGCTCCTTTTCTTTTGAA
ATTAAGGTACGGTGCTTTTATTTGCAGAGGCAACTGCATGTGGAACTTGGGCTCTGGTGTGTTGCACCCTTGCTGGAATA
TACAGTTCATACATGACCCTGTGATGATGTGAATTGTGAGAGGAATGATACTTTGCTGTAAATGTTCATCATATTTCATA
CTTTCCTGGAAACATTTTTCCTTGGCTTCAGCAGTTGCACTGCTAGATTTTCGTAGCTGTCAGGCATATGCTTCTAATTT
GCTCCGATATGACTGGANATGGAATGGTATAGCCGTATAGGTCCTGAGCCACAACAAACATCTGAAGCNGNTGTAATTAG
TCCAGCTTGTTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8858.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis