Browse Element(s) Details


Os.16883.1.S1_a_at

Description gb:AK072328.1
DB_XREF= gi:32982351
TID=Os.16883.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037F22, full insert sequence.
FL= gb:AK072328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5084011/11BAH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16883.1.S1_a_at--732--8571Chr02:31064680..31064704 (25 bp)
TGGTATCATTTCTCAGCGACTTCGG
LOC_Os02g50840
Os.16883.1.S1_a_at--167--5071Chr02:31064815..31064839 (25 bp)
GCAGCTGCATGTGGTACTTGGGTTC
LOC_Os02g50840
Os.16883.1.S1_a_at--191--7831Chr02:31064827..31064851 (25 bp)
GGTACTTGGGTTCGTGTACTGCACC
LOC_Os02g50840
Os.16883.1.S1_a_at--563--6711Chr02:31064836..31064860 (25 bp)
GTTCGTGTACTGCACCCTTGCTGGA
LOC_Os02g50840
Os.16883.1.S1_a_at--996--2111Chr02:31064874..31064898 (25 bp)
ACATGGATACTTTCCTTGTGATGAT
LOC_Os02g50840
Os.16883.1.S1_a_at--1125--8271Chr02:31064979..31065003 (25 bp)
GGCATTGGCAGTTGCTTTGCTAGAT
LOC_Os02g50840
Os.16883.1.S1_a_at--594--10011Chr02:31064999..31065023 (25 bp)
TAGATTTTCTTAGCTGTCAGGGACT
LOC_Os02g50840
Os.16883.1.S1_a_at--446--4911Chr02:31065031..31065055 (25 bp)
GCTTCTAATTTGCTTGGGAGGGTAT
LOC_Os02g50840
Os.16883.1.S1_a_at--1137--3731Chr02:31065088..31065112 (25 bp)
CTCAAGAAACATCTGAAGCCGCTGT
LOC_Os02g50840
Os.16883.1.S1_a_at--875--5411Chr02:31065102..31065126 (25 bp)
GAAGCCGCTGTAATTAGGTTCAGTT
LOC_Os02g50840
Os.16883.1.S1_a_at--962--651Chr02:31065146..31065170 (25 bp)
ATGACAGACCAATTTTCTCTTTTTG
LOC_Os02g50840
Target Sequence 
TGGTATCATTTCTCAGCGACTTCGGCATCCAATGAGCTTGTATGTGCTTGCTTCTCGCCTTAAACGACCTGCTTTGTTTA
TCACCTGCAGCTCTTTTTCTTTTGATATTAAGGTGCTGTGTTTTCATTTGCAGAGGCAGCTGCATGTGGTACTTGGGTTC
GTGTACTGCACCCTTGCTGGAATATACAATTCATACATGGATACTTTCCTTGTGATGATGTGAATGTGAGAGGAACGATG
CTTTGATGTAATTGCTGTAAATGTTCATATTTCATACTTTCCTGGAAACAATTTTCCTTGGCATTGGCAGTTGCTTTGCT
AGATTTTCTTAGCTGTCAGGGACTCAGGCATGCTTCTAATTTGCTTGGGAGGGTATGACTGGAGATGGAAACGGTATAGG
TCCTGGGCCTCAAGAAACATCTGAAGCCGCTGTAATTAGGTTCAGTTTGTTTGTTTTTAGTTTCTTATGACAGACCAATT
TTCTCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16883.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis