Browse Element(s) Details


Os.8916.1.S1_at

Description gb:AK073562.1
DB_XREF= gi:32983585
TID=Os.8916.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042I18, full insert sequence.
FL= gb:AK073562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5082011/11Permease I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8916.1.S1_at--350--9591Chr02:31041023..31041047 (25 bp)
TCATCCTCGGGTTCTCAGTTTTTAT
LOC_Os02g50820
Os.8916.1.S1_at--25--10431Chr02:31041002..31041026 (25 bp)
TTATGGGCCTTTCTGTTCCTCAGTA
LOC_Os02g50820
Os.8916.1.S1_at--612--1871Chr02:31040972..31040996 (25 bp)
ACGAGTACACATCTGTTGCTGGTTA
LOC_Os02g50820
Os.8916.1.S1_at--822--811Chr02:31040948..31040972 (25 bp)
ATGGTCCTGTTCATACACACTCAAG
LOC_Os02g50820
Os.8916.1.S1_at--798--7091Chr02:31040799..31040823 (25 bp)
GTCAAAGGCATTCGTTGCTGGCTTT
LOC_Os02g50820
Os.8916.1.S1_at--160--8531Chr02:31040761..31040785 (25 bp)
TGGACAACACGATTCACAGGCATGA
LOC_Os02g50820
Os.8916.1.S1_at--246--5411Chr02:31040668..31040692 (25 bp)
GAAGCGAGGAGTTCTATTCCCTGCC
LOC_Os02g50820
Os.8916.1.S1_at--465--2831Chr02:31040630..31040654 (25 bp)
AAGTTCTTCCCATCAGTATGAGCAT
LOC_Os02g50820
Os.8916.1.S1_at--381--6931Chr02:31040587..31040611 (25 bp)
GTAGGTTACTGTGTACTGTCTGTCC
LOC_Os02g50820
Os.8916.1.S1_at--1084--7431Chr02:31040577..31040601 (25 bp)
GTGTACTGTCTGTCCCTTATGAACA
LOC_Os02g50820
Os.8916.1.S1_at--491--1971Chr02:31040533..31040557 (25 bp)
ACTGTTGGCCTGAATTCTCTAGGTA
LOC_Os02g50820
Target Sequence 
TCATCCTCGGGTTCTCAGTTTTTATGGGCCTTTCTGTTCCTCAGTACTTCAACGAGTACACATCTGTTGCTGGTTATGGT
CCTGTTCATACACACTCAAGATGGTTCAATGACATCGTGAATGTCATATTCTCGTCAAAGGCATTCGTTGCTGGCTTTGT
TGCATATTTGCTGGACAACACGATTCACAGGCATGATAGTTCTGTCAGAAAAGATCGAGGACACCATTGGTGGGATAAAT
TCCGATCATACAGGACTGACACAAGAAGCGAGGAGTTCTATTCCCTGCCGTTCAACCTGAACAAGTTCTTCCCATCAGTA
TGAGCATACCGTGGCTAATGCAAGAGTAGGTTACTGTGTACTGTCTGTCCCTTATGAACAGGTTNCCCTGGAAGTGGCAA
ACTGTTGGCCTGAATTCTCTAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis