Browse Element(s) Details


Os.52711.1.S1_x_at

Description gb:AK068867.1
DB_XREF= gi:32978892
TID=Os.52711.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002E03, full insert sequence.
FL= gb:AK068867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5079011/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50810Os.52778.1.S1_at11/112+31032683..31034651expressed protein
LOC_Os02g50820Os.8916.1.S1_at11/112+31040376..31045820Permease I, putative, expressed
LOC_Os02g50830Os.9457.1.S1_at6/112+31049884..31053287expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52711.1.S1_x_at--851--6651Chr02:31019047..31019067 (21 bp)
GTTGAGGACTGAGCTTCTATCTTTG
LOC_Os02g50790
Os.52711.1.S1_x_at--426--9551Chr02:31019032..31019056 (25 bp)
TCTATCTTTGCGTTCTGAGCGTGAT
LOC_Os02g50790
Os.52711.1.S1_x_at--954--4791Chr02:31018983..31019007 (25 bp)
GCTCGAGAACGACTTAATGGATTTA
LOC_Os02g50790
Os.52711.1.S1_x_at--415--2151Chr02:31018963..31018983 (21 bp)
ACAGCAGAGCTTGAACACCAGAGGA
LOC_Os02g50790
Os.52711.1.S1_x_at--738--6171Chr02:31018683..31018707 (25 bp)
GAGGAGAACTCACGGAAGCTATTAA
LOC_Os02g50790
Os.52711.1.S1_x_at--325--211Chr02:31018511..31018535 (25 bp)
ATTTGACCACGAGGGTGCATCGCCT
LOC_Os02g50790
Os.52711.1.S1_x_at--270--3851Chr02:31017900..31017923 (24 bp)
CTGCAGGCGACCATTGACACAATAC
LOC_Os02g50790
Os.52711.1.S1_x_at--655--10751Chr02:31017887..31017911 (25 bp)
TTGACACAATACATGCCACCGAGGA
LOC_Os02g50790
Os.52711.1.S1_x_at--57--2311Chr02:31017424..31017448 (25 bp)
AAAGGGATCATGTCCGCGTCCTGAC
LOC_Os02g50790
Os.52711.1.S1_x_at--9--4651Chr02:31017409..31017433 (25 bp)
GCGTCCTGACGCTTGATAAGAAAAA
LOC_Os02g50790
Os.52711.1.S1_x_at--564--5531Chr02:31017390..31017414 (25 bp)
GAAAAATGCCTTTGACGGATGTCTG
LOC_Os02g50790
Target Sequence 
GTTGAGGACTGAGCTTCTATCTTTGCGTTCTGAGCGTGATAAGGCGGTTCTTGAAGCAGAATTTGCTCGAGAACGACTTA
ATGGATTTACAGCAGAGCTTGAACACCAGAGGAAGGAAGCTAATTCTATTTCGCTAAGAAATGCGGAATTGATGCATTTA
GTAGTTGATTACGAAAAAAGATTGCGTGAGAACTCAGAATCTATGAAGGCTGTAGAGGAGAACTCACGGAAGCTATTAAT
GGAGATGTCTATTCTAAAGAATGAAAAAGAGATCTTAGCAAAGTCAGAGAAAAAAGCTTTGGAGGAAGTTCATGATTTGA
CCACGAGGGTGCATCGCCTGCAGGCGACCATTGACACAATACATGCCACCGAGGAGGTTCAAGAGAATGCAAGGTCTATT
GAAAGGAGAAATCAAGAGGAGTACATCAAGAGACTAGAAAGGGACTGGGCTGAAGTGAAAAAAGAGCTTNCAGAGCAAAG
GGATCATGTCCGCGTCCTGACGCTTGATAAGAAAAATGCCTTTGACGGATGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis