Browse Element(s) Details


Os.38184.1.S1_at

Description gb:AK120667.1
DB_XREF= gi:37990290
TID=Os.38184.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160C13, full insert sequence.
FL= gb:AK105716.1 gb:AK120667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5078011/11Glycosyl hydrolase family 47 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006487biological_processprotein amino acid N-linked glycosylation
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38184.1.S1_at--961--6031Chr02:31002229..31002253 (25 bp)
GAGATAATCCCGACAACGCATGTTC
LOC_Os02g50780
Os.38184.1.S1_at--581--2611Chr02:31002358..31002382 (25 bp)
AACCCTTCCGTGTGAGCGCATTGTC
LOC_Os02g50780
Os.38184.1.S1_at--844--4931Chr02:31002375..31002399 (25 bp)
GCATTGTCGTCTCAAGTTTGTCCAG
LOC_Os02g50780
Os.38184.1.S1_at--520--4411Chr02:31002445..31002469 (25 bp)
GCCATGTACCAGACGTGTTACCTAC
LOC_Os02g50780
Os.38184.1.S1_at--434--7411Chr02:31002459..31002483 (25 bp)
GTGTTACCTACCCACAGATGCAGGA
LOC_Os02g50780
Os.38184.1.S1_at--517--1431Chr02:31002525..31002549 (25 bp)
AGAACTTGCAGTATGGCTGGCTACT
LOC_Os02g50780
Os.38184.1.S1_at--768--6531Chr02:31002594..31002618 (25 bp)
GATTATACTGTTTCCCATTCTTTAA
LOC_Os02g50780
Os.38184.1.S1_at--1162--1051Chr02:31002629..31002653 (25 bp)
AGTGAACGTTACTGGACGGCCTCGG
LOC_Os02g50780
Os.38184.1.S1_at--800--6491Chr02:31002701..31002725 (25 bp)
GATAGTAGCAAAGTCGTTGTCCCAG
LOC_Os02g50780
Os.38184.1.S1_at--796--6631Chr02:31002716..31002740 (25 bp)
GTTGTCCCAGTTGTTAGCGCAGAAT
LOC_Os02g50780
Os.38184.1.S1_at--513--3151Chr02:31002755..31002779 (25 bp)
AATTCTCCTAATGTATTCTTTGCTG
LOC_Os02g50780
Target Sequence 
GAGATAATCCCGACAACGCATGTTCCCAGCAACTGGACATTCGTTAAGGATGACAGCCAACCCTTCCGTGTGAGCGCATT
GTCGTCTCAAGTTTGTCCAGAAACGATTTTCCGGCAAAGCGTTGGCTCCCCGTGGGAGAGTGCATGCCATGTACCAGACG
TGTTACCTACCCACAGATGCAGGACCGATGATGACTGTGGAGTGGAGGCCGTATCATGCAGGAGAAGAACTTGCAGTATG
GCTGGCTACTGCGGCTTGTGGCTGGGGGTTTATTAGCTTTTTTTTTTCTGTGGAGATTATACTGTTTCCCATTCTTTAAA
GCACAAAAAAGTGAACGTTACTGGACGGCCTCGGCCTGTTACTTCTGTACATTAGAATATATATAGCTAATCGAACAGAA
TGATAGTAGCAAAGTCGTTGTCCCAGTTGTTAGCGCAGAATGAAACATGTATGCAAATTCTCCTAATGTATTCTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis