Browse Element(s) Details


Os.5623.1.S1_at

Description gb:AK071385.1
DB_XREF= gi:32981408
TID=Os.5623.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092C13, full insert sequence.
FL= gb:AK071385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5077011/11Peroxidase 65 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5623.1.S1_at--802--951Chr02:30995181..30995205 (25 bp)
AGGACCCGACGATCGCGGCGTTCAA
LOC_Os02g50770
Os.5623.1.S1_at--38--2491Chr02:30995234..30995258 (25 bp)
AACATGTACTTCGTGAACCTGGAGC
LOC_Os02g50770
Os.5623.1.S1_at--359--1311Chr02:30995289..30995313 (25 bp)
AGATGTGGTCGGACAAGCGCACCCA
LOC_Os02g50770
Os.5623.1.S1_at--712--2691Chr02:30995381..30995405 (25 bp)
AAGCTCAGCCTCTTCGGCGTCAAGA
LOC_Os02g50770
Os.5623.1.S1_at--200--8411Chr02:30995454..30995478 (25 bp)
GGCCCATGCCCAAGTGATGATCTGA
LOC_Os02g50770
Os.5623.1.S1_at--1054--4551Chr02:30995526..30995550 (25 bp)
GCGCGCCCGGTTTACGAGGACGATA
LOC_Os02g50770
Os.5623.1.S1_at--823--10351Chr02:30995619..30995643 (25 bp)
TTTTTGTTTTGCGTGCGTGACTTAT
LOC_Os02g50770
Os.5623.1.S1_at--864--4651Chr02:30995633..30995657 (25 bp)
GCGTGACTTATTTTTCATCGTTGGT
LOC_Os02g50770
Os.5623.1.S1_at--487--1571Chr02:30995677..30995701 (25 bp)
AGCTAGATTTGTGTCGAGTACTCGA
LOC_Os02g50770
Os.5623.1.S1_at--331--6091Chr02:30995692..30995716 (25 bp)
GAGTACTCGAGTTTCCTGTTCGATT
LOC_Os02g50770
Os.5623.1.S1_at--1030--7031Chr02:30995719..30995743 (25 bp)
GTAATTTAATTTCTGCTCGTACGAG
LOC_Os02g50770
Target Sequence 
AGGACCCGACGATCGCGGCGTTCAACGACGTGATGACGCCCGGGAAGTTCGACAACATGTACTTCGTGAACCTGGAGCGA
GGGCTCGGCCTCCTCGCCACGGACGAGGAGATGTGGTCGGACAAGCGCACCCAGCCGTTCGTGAAGCTNTACGCGTCCAA
CCCCACCGCCTTNTTNGNCGACTTCTCCCGCGCCATCGACAAGCTCAGCCTCTTCGGCGTCAAGACCGGCGCCGCCGGCG
AGATCAGGCGGCGCTGCGACACCTACAACCACGGGCCCATGCCCAAGTGATGATCTGATCTGATCTGATCCGATCCATCG
ATCGATCGATCGATCGCCCGCTCGCGCGCGCCCGGTTTACGAGGACGATATGATCGTCATATCATAATTAAGTGATTCGC
TAAATCGATTGTTTTTCGTTCGTTTTTGTATTTGTATTTTTTTGTTTTGCGTGCGTGACTTATTTTTCATCGTTGGTTTG
TTAACATTCGTGAATAAGCTAGATTTGTGTCGAGTACTCGAGTTTCCTGTTCGATTCAGTAATTTAATTTCTGCTCGTAC
GAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis