Browse Element(s) Details


Os.55424.2.S1_at

Description gb:AK108067.1
DB_XREF= gi:32993276
TID=Os.55424.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C01, full insert sequence.
FL= gb:AK108067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5074011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55424.2.S1_at--1006--3891Chr02:30981955..30981979 (25 bp)
CTGGTCGGCACGATGGAGCGCCACA
LOC_Os02g50740
Os.55424.2.S1_at--851--5811Chr02:30982042..30982066 (25 bp)
GACCGCTCCGTTGTCGTCTGGGAGA
LOC_Os02g50740
Os.55424.2.S1_at--562--1831Chr02:30982118..30982142 (25 bp)
ACGCGAGAGCGATACTTTGCCTGGC
LOC_Os02g50740
Os.55424.2.S1_at--155--7791Chr02:30982207..30982231 (25 bp)
GGTGCGGAGAACAACGGCTACACTT
LOC_Os02g50740
Os.55424.2.S1_at--1019--9611Chr02:30982241..30982265 (25 bp)
TCATGGAAAGCCATGGCGCGGCCGT
LOC_Os02g50740
Os.55424.2.S1_at--482--5891Chr02:30982377..30982401 (25 bp)
GAGCGTGTTTATTCCATGTTTGTAG
LOC_Os02g50740
Os.55424.2.S1_at--103--8771Chr02:30982393..30982417 (25 bp)
TGTTTGTAGCTAGTTCGTGTTCGTT
LOC_Os02g50740
Os.55424.2.S1_at--552--10591Chr02:30982412..30982436 (25 bp)
TTCGTTGTCCTCTGTGGACGGTTAT
LOC_Os02g50740
Os.55424.2.S1_at--451--9851Chr02:30982439..30982463 (25 bp)
TAAATTCTGTCCACGTCTCTTAAGG
LOC_Os02g50740
Os.55424.2.S1_at--649--10491Chr02:30982458..30982482 (25 bp)
TTAAGGATGATGCACCACCACCAAT
LOC_Os02g50740
Os.55424.2.S1_at--895--6411Chr02:30982492..30982516 (25 bp)
GATCTACCTACGACCATACATTTTT
LOC_Os02g50740
Target Sequence 
CTGGTCGGCACGATGGAGCGCCACAGGTCGGCGGTGAACGCGCTCGCTCTCGGAGCCAACGGCAAGGTGCTCTACTCCGG
CGCGTGCGACCGCTCCGTTGTCGTCTGGGAGAGCGCCGGCGGCGGCGACGGCGGCATGGAGGCCACGGGCACGCTCAGAG
GGCACGCGAGAGCGATACTTTGCCTGGCGGCGGCCGGCGAGCTGGTGTGCAGCGGCTCGGCGGACAGGACGGTCAGGGTG
TGGAGGAGGGGAGGTGCGGAGAACAACGGCTACACTTGCCTCGCCGTCATGGAAAGCCATGGCGCGGCCGTGAAGAGCCT
GGCATTGGTGCGCGGCGGACGCGACGACGATGGATCGTGCTCGTCGGAGGGATCTTCTGCCCTCGTTTGCAGCGGAGCCC
TGGATGGAGATGTGAAGATCTGGAGCGTGTTTATTCCATGTTTGTAGCTAGTTCGTGTTCGTTGTCCTCTGTGGACGGTT
ATTGTAAATTCTGTCCACGTCTCTTAAGGATGATGCACCACCACCAATTCTCCTCACGATCTACCTACGACCATACATTT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55424.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis