Browse Element(s) Details


OsAffx.24816.1.S1_at

Description tigr:9630.m04970
TID=OsAffx.24816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5070010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24816.1.S1_at--675--7871Chr02:30965741..30965765 (25 bp)
GGTTACGTGCCGAGATTCTCTTCTG
LOC_Os02g50700
OsAffx.24816.1.S1_at--791--6051Chr02:30965752..30965776 (25 bp)
GAGATTCTCTTCTGCCACGTTGCAA
LOC_Os02g50700
OsAffx.24816.1.S1_at--106--10591Chr02:30965756..30965780 (25 bp)
TTCTCTTCTGCCACGTTGCAAAAAG
LOC_Os02g50700
OsAffx.24816.1.S1_at--1036--10551Chr02:30965761..30965785 (25 bp)
TTCTGCCACGTTGCAAAAAGAGACG
LOC_Os02g50700
OsAffx.24816.1.S1_at--135--2431Chr02:30965776..30965800 (25 bp)
AAAAGAGACGCGACCTGTCTTCCCT
LOC_Os02g50700
OsAffx.24816.1.S1_at--129--5831Chr02:30965787..30965811 (25 bp)
GACCTGTCTTCCCTCTTCAGAGTTC
LOC_Os02g50700
OsAffx.24816.1.S1_at--997--9611Chr02:30965803..30965827 (25 bp)
TCAGAGTTCAGTCCCCAACATTTTT
LOC_Os02g50700
OsAffx.24816.1.S1_at--1001--9251NONE
TCCTCCCTGCCGGGTTTGTTGGGCA
NONE
OsAffx.24816.1.S1_at--267--5171Chr02:30966936..30966960 (25 bp)
GCAAGAATTTAACTGGCCATCTAGT
LOC_Os02g50700
OsAffx.24816.1.S1_at--586--9791Chr02:30966945..30966969 (25 bp)
TAACTGGCCATCTAGTAACCAAAAG
LOC_Os02g50700
OsAffx.24816.1.S1_at--368--8431Chr02:30966950..30966974 (25 bp)
GGCCATCTAGTAACCAAAAGGGTAT
LOC_Os02g50700
Target Sequence 
GGTTACGTGCCGAGATTCTCTTCTGCCACGTTGCAAAAAGAGACGCGACCTGTCTTCCCTCTTCAGAGTTCAGTCCCCAA
CATTTTTTATGGGACAGATACCAGCAGGCAGCAGTTGCAGTTCCTCACCAAAACGCCATCCCCATCCTCCCTGCCATCCT
CCCTGCCGGGTTTGTTGGGCAAATCTCCTGTCAGGCCTGCACTTTGCAACGATGCTCTTCTCTCCAGGTTCCTCTCAACG
GGGAAAGATGAGAACACAGTGACCGAAATCGGAGAGAAGGCAAGATCAACAGCGGAACAATTCCTCAAGGTGGCCAAGGA
GAAGACTGACGAGGTAAGCGAGAAAACAAAGGAAACGATGCACGAAACAAAGGAAGCAGTGGTCGGGGAGTCAGATGACG
AGAAGGAGAAGTTCAAGCAGAGGGTTGAGGAGGGGAGTTTGCAAGAATTTAACTGGCCATCTAGTAACCAAAAGGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis