Browse Element(s) Details


Os.23154.1.S1_at

Description gb:AK070261.1
DB_XREF= gi:32980285
TID=Os.23154.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042P13, full insert sequence.
FL= gb:AK099325.1 gb:AK070261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5069011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23154.1.S1_at--551--8891Chr02:30960317..30960341 (25 bp)
TGAGGTACTCCGTCGGCAGCTCGTA
LOC_Os02g50690
Os.23154.1.S1_at--410--5071Chr02:30960302..30960326 (25 bp)
GCAGCTCGTACAACGTGGTGTCCTA
LOC_Os02g50690
Os.23154.1.S1_at--605--3211Chr02:30960163..30960187 (25 bp)
CAACCGCAACGGGTACCTGTTCTGG
LOC_Os02g50690
Os.23154.1.S1_at--682--9331Chr02:30960057..30960081 (25 bp)
TCGCCCATTAACTTCAAGCAGCTTG
LOC_Os02g50690
Os.23154.1.S1_at--923--6831Chr02:30960033..30960057 (25 bp)
GTTTCTTCTTGATGCAGATTACGCT
LOC_Os02g50690
Os.23154.1.S1_at--736--5031Chr02:30960020..30960044 (25 bp)
GCAGATTACGCTAATTCATCTTGAT
LOC_Os02g50690
Os.23154.1.S1_at--569--1891Chr02:30959973..30959997 (25 bp)
ACGTACTCGTACTATTGATGATGCA
LOC_Os02g50690
Os.23154.1.S1_at--831--51Chr02:30959960..30959984 (25 bp)
ATTGATGATGCATGCCGGCAGCTAA
LOC_Os02g50690
Os.23154.1.S1_at--414--211Chr02:30959910..30959934 (25 bp)
ATTTGCACTCTTGATTCTTTTTAGA
LOC_Os02g50690
Os.23154.1.S1_at--611--1391Chr02:30959863..30959887 (25 bp)
AGACGAATCACATCATTTTAGAGGC
LOC_Os02g50690
Os.23154.1.S1_at--35--2971Chr02:30959813..30959837 (25 bp)
AATGGCCTGCAAATAAACTCTTGAA
LOC_Os02g50690
Target Sequence 
TGAGGTACTCCGTCGGCAGCTCGTACAACGTGGTGTCCTACCTCACGGCGAACCCGNCNNCCNCGGGGTTCAAGGTGGTG
AACAGCGCGTNNTNNGNCGNCGGCCGGCTCNACGCNCAGNTCGGGTGCGGGGCGCCCAACTCCACNTNCTGCGGCAACCG
CAACGGGTACCTGTTCTGGGACGGGGTGCACGGGACGCAGGCCACCTCCAGGAAGGGCGCCGCCGCCATCTACTCCGCGC
CGCCGCAGATGGGCTTCGCCTCGCCCATTAACTTCAAGCAGCTTGTTTCTTCTTGATGCAGATTACGCTAATTCATCTTG
ATATATATCGTAGCAATACTATACACGTACTCGTACTATTGATGATGCATGCCGGCAGCTAAAGTTAGCTATAAGAGGAA
AAGAAATATTTGCACTCTTGATTCTTTTTAGAACGAGAGTGATAGAGATACAATAGACGAATCACATCATTTTAGAGGCA
TGTAAAAGTTGCAAACTAAGGCCAAATGGCCTGCAAATAAACTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis