Browse Element(s) Details


OsAffx.3029.1.S1_at

Description tigr:9630.m04975
TID=OsAffx.3029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g507509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3029.1.S1_at--625--9151Chr02:30983753..30983777 (25 bp)
TGCGCACGGCGTGGTAGTCCTCGTA
LOC_Os02g50750
OsAffx.3029.1.S1_at--1061--3331Chr02:30983757..30983781 (25 bp)
CACGGCGTGGTAGTCCTCGTAGGTC
LOC_Os02g50750
OsAffx.3029.1.S1_at--1072--9391Chr02:30983773..30983797 (25 bp)
TCGTAGGTCCCACGGAGCGACATGT
LOC_Os02g50750
OsAffx.3029.1.S1_at--703--1031Chr02:30983777..30983801 (25 bp)
AGGTCCCACGGAGCGACATGTAGTA
LOC_Os02g50750
OsAffx.3029.1.S1_at--997--4171Chr02:30983781..30983805 (25 bp)
CCCACGGAGCGACATGTAGTAGAGC
LOC_Os02g50750
OsAffx.3029.1.S1_at--313--3631Chr02:30983858..30983882 (25 bp)
CTTGCGGCTGCTACCCTGCGGGTTG
LOC_Os02g50750
OsAffx.3029.1.S1_at--1020--5611NONE
GACAACGCGGCATGCGAGTAATCGA
NONE
OsAffx.3029.1.S1_at--225--4991NONE
GCATGCGAGTAATCGAAGAGGTCGA
NONE
OsAffx.3029.1.S1_at--510--772Chr08:11519286..11519309 (24 bp)
ATGTCCTGATGCAGTCTTGAACGAT
NONE
OsAffx.3029.1.S1_at--1050--4252Chr08:11519290..11519669 (25 bp)
CCTGATGCAGTCTTGAACGATGCCG
NONE
OsAffx.3029.1.S1_at--11--94731Chr11:6909922..6909945 (24 bp)
TCTGGACCGGCGGAACATTGGACTT
NONE
Target Sequence 
TGCGCACGGCGTGGTAGTCCTCGTAGGTCCCACGGAGCGACATGTAGTAGAGCAACACCCGCGGCCCCTCGCCATCACCA
GGCTTGCTCCAGATGGCGGCCGCCGCTTGCGGCTGCTACCCTGCGGGTTGGAGGTTGTGGAGGACGCGCAGCGCGCACGC
GGTGACGCGGATGCGGTGGAAGACGTGCGGCGGCGACAGGGAGAGGGAGGACAACGCGGCATGCGAGTAATCGAAGAGGT
CGAATGTCCTGATGCAGTCTTGAACGATGCCGACGTAAACGATACAATTGTCTGGACCGGCGGAACATTGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis