Browse Element(s) Details


Os.49471.1.S1_at

Description gb:AK071144.1
DB_XREF= gi:32981167
TID=Os.49471.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082B04, full insert sequence.
FL= gb:AK068712.1 gb:AK071144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5076011/11Chaperone protein dnaJ 16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed
LOC_Os02g50770Os.5623.1.S1_at11/112+30993892..30995766Peroxidase 65 precursor, putative, expressed
LOC_Os02g50780Os.38184.1.S1_at11/112+30998105..31002834Glycosyl hydrolase family 47 protein, expressed
LOC_Os02g50790OsAffx.12580.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.27411.1.A1_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os02g50790Os.52711.1.S1_x_at11/112+31003317..31027548Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0009958biological_processpositive gravitropism
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0008092molecular_functioncytoskeletal protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49471.1.S1_at--539--8191Chr02:30992615..30992636 (22 bp)
GGAAGGTATTCCCTGCAAGTTACTA
LOC_Os02g50760
Os.49471.1.S1_at--419--9011Chr02:30992625..30992649 (25 bp)
TGCAAGTTACTACTCCCAGGAAATG
LOC_Os02g50760
Os.49471.1.S1_at--1020--5431Chr02:30992650..30992674 (25 bp)
GAACCCAAGGGAGTTGCTCCGAGAA
LOC_Os02g50760
Os.49471.1.S1_at--1010--10111Chr02:30992679..30992703 (25 bp)
TATCTTTTTCTTTGTCGTCCACTCC
LOC_Os02g50760
Os.49471.1.S1_at--899--7191Chr02:30992692..30992716 (25 bp)
GTCGTCCACTCCATGGGATCAAATA
LOC_Os02g50760
Os.49471.1.S1_at--896--271Chr02:30992714..30992738 (25 bp)
ATAGGCAGGAATCTCAGTTTGACAT
LOC_Os02g50760
Os.49471.1.S1_at--830--8151Chr02:30992741..30992765 (25 bp)
GGAAAGACACCCTCGCAAATTATTT
LOC_Os02g50760
Os.49471.1.S1_at--1088--10411Chr02:30992760..30992784 (25 bp)
TTATTTTTTCTCCTGTGACGTAACA
LOC_Os02g50760
Os.49471.1.S1_at--830--2831Chr02:30992799..30992823 (25 bp)
AAGTCAGGAGCCTCGGCAGTTTCAG
LOC_Os02g50760
Os.49471.1.S1_at--1092--5531Chr02:30992929..30992953 (25 bp)
GAAACTGTCTTATGTTGTACACTGC
LOC_Os02g50760
Os.49471.1.S1_at--712--10771Chr02:30992943..30992967 (25 bp)
TTGTACACTGCAGCCAGAATCCAAT
LOC_Os02g50760
Target Sequence 
GGAAGGTATTCCCTGCAAGTTACTACTCCCAGGAAATGGAACCCAAGGGAGTTGCTCCGAGAAGAAATATCTTTTTCTTT
GTCGTCCACTCCATGGGATCAAATAGGCAGGAATCTCAGTTTGACATTCGGAAAGACACCCTCGCAAATTATTTTTTCTC
CTGTGACGTAACATTTTGTTTCCTGAAAAGTCAGGAGCCTCGGCAGTTTCAGAAATGANGNAAAATATTNCATGTAGTGT
TCTTTTGGGGATCTTACTGGCNCTGTATCCGTTCNCCCGGAACCAAGATGGTTAATGATGTGTGTATACAGCTTCAAGAA
ACTGTCTTATGTTGTACACTGCAGCCAGAATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis