Browse Element(s) Details


OsAffx.12581.1.S1_at

Description tigr:9630.m04989
TID=OsAffx.12581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5089011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12581.1.S1_at--50--2911Chr02:31100518..31100542 (25 bp)
AAGGTATGGGCGTCAGGGATGGCAA
LOC_Os02g50890
OsAffx.12581.1.S1_at--639--851Chr02:31100500..31100524 (25 bp)
ATGGCAAGGGATATGCATTTGTGCA
LOC_Os02g50890
OsAffx.12581.1.S1_at--892--4951Chr02:31100486..31100510 (25 bp)
GCATTTGTGCATATTGCTACTGGAT
LOC_Os02g50890
OsAffx.12581.1.S1_at--561--7331Chr02:31100480..31100504 (25 bp)
GTGCATATTGCTACTGGATTTTCTC
LOC_Os02g50890
OsAffx.12581.1.S1_at--738--1951Chr02:31100468..31100492 (25 bp)
ACTGGATTTTCTCATTGTCCTCATC
LOC_Os02g50890
OsAffx.12581.1.S1_at--593--10271Chr02:31100461..31100485 (25 bp)
TTTCTCATTGTCCTCATCCCCTGTA
LOC_Os02g50890
OsAffx.12581.1.S1_at--881--531Chr02:31100446..31100470 (25 bp)
ATCCCCTGTACCTCAAACAAATGCA
LOC_Os02g50890
OsAffx.12581.1.S1_at--10--6991Chr02:31100439..31100463 (25 bp)
GTACCTCAAACAAATGCAACAATGC
LOC_Os02g50890
OsAffx.12581.1.S1_at--139--5151Chr02:31100424..31100448 (25 bp)
GCAACAATGCCGAAGAGGTCACCAC
LOC_Os02g50890
OsAffx.12581.1.S1_at--557--1331Chr02:31100411..31100435 (25 bp)
AGAGGTCACCACCAGAAACAGAAGC
LOC_Os02g50890
OsAffx.12581.1.S1_at--913--5031Chr02:31100388..31100412 (25 bp)
GCAGAAGGCTCTCGAATGCAAGAAA
LOC_Os02g50890
Target Sequence 
AAGGTATGGGCGTCAGGGATGGCAAGGGATATGCATTTGTGCATATTGCTACTGGATTTTCTCATTGTCCTCATCCCCTG
TACCTCAAACAAATGCAACAATGCCGAAGAGGTCACCACCAGAAACAGAAGCAGAAGGCTCTCGAATGCAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis