Browse Element(s) Details


Os.49512.1.S1_at

Description gb:AK068237.1
DB_XREF= gi:32978255
TID=Os.49512.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148K06, full insert sequence.
FL= gb:AK068237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4860011/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48580NANA5+27756107..27757192hypothetical protein
LOC_Os05g48590Os.8928.1.S1_at11/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48590Os.56074.1.S1_at1/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49512.1.S1_at--1010--5391Chr05:27781064..27781088 (25 bp)
GAAGCTTGTTAAACATGAGCGCCAG
LOC_Os05g48600
Os.49512.1.S1_at--252--4931Chr05:27781067..27781091 (25 bp)
GCTTGTTAAACATGAGCGCCAGATA
LOC_Os05g48600
Os.49512.1.S1_at--1159--8771Chr05:27781070..27781094 (25 bp)
TGTTAAACATGAGCGCCAGATAGAG
LOC_Os05g48600
Os.49512.1.S1_at--662--9751Chr05:27781215..27781239 (25 bp)
TAATATTTTGATGCCATGCCACCCA
LOC_Os05g48600
Os.49512.1.S1_at--479--231Chr05:27781217..27781241 (25 bp)
ATATTTTGATGCCATGCCACCCACT
LOC_Os05g48600
Os.49512.1.S1_at--1084--8851Chr05:27781223..27781247 (25 bp)
TGATGCCATGCCACCCACTGTGTAT
LOC_Os05g48600
Os.49512.1.S1_at--432--591Chr05:27781230..27781254 (25 bp)
ATGCCACCCACTGTGTATGCTCGTA
LOC_Os05g48600
Os.49512.1.S1_at--388--4371Chr05:27781237..27781261 (25 bp)
CCACTGTGTATGCTCGTACCTCGTA
LOC_Os05g48600
Os.49512.1.S1_at--82--4811Chr05:27781248..27781385 (25 bp)
GCTCGTACCTCGTACAGGTGGCCAT
LOC_Os05g48600
Os.49512.1.S1_at--272--3791Chr05:27781249..27781386 (25 bp)
CTCGTACCTCGTACAGGTGGCCATG
LOC_Os05g48600
Os.49512.1.S1_at--973--5071Chr05:27781690..27781714 (25 bp)
GCAGCCATTGTAACTGTTAAGAGCA
LOC_Os05g48600
Target Sequence 
GAAGCTTGTTAAACATGAGCGCCAGATAGAGGGTCTCCCAGAAGATTGCAACAGGGTTATGGTTTGGAATTTTAACTTGG
AACCTCCTCTACTCAATGTCCCCCCTGGCTGGTCATTGCATAAGAACCTTGATGCCGTTATTCCTGTAACATAATATTTT
GATGCCATGCCACCCACTGTGTATGCTCGTACCTCGTACAGGTGGCCATGAGGCTGCTCAGTGATGCCTTCCTGAACAAA
CCGCACACTGGATTACACGAAGTTGCCGTGGTTTGATCCTCCAGCAATTGTCATATCAGATTATCAGTAGCTGTGCCAAG
CAAGATGCCTGNCCAAATTTTTTTTCCTTTTTTTNTTCTTCTCCACTTNCTTTTTTTTTTTTNNGAGGTAAATGTGTACT
TCCNTTTTGTATTCTGTTCATTTTTTCCCCCAGATATCCACCAGCTAGATGTTCCCCTATAGATTTTTTNAGCTTCCTTT
GTTTTACTGTGTGTTNCCTTNCAGATGTNAAATCATGCAGCCATTGTAACTGTTAAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis