Browse Element(s) Details


Os.8928.1.S1_at

Description gb:AK106181.1
DB_XREF= gi:32991390
TID=Os.8928.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D03, full insert sequence.
FL= gb:AK109363.2 gb:AK099253.1 gb:AK106181.1 gb:AK061439.1 gb:AK104018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4859011/11Auxin-responsive protein IAA8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48550Os.10827.1.S1_x_at7/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48550Os.46055.2.S1_x_at4/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48560OsAffx.15151.1.S1_at8/115+27740076..27744619expressed protein
LOC_Os05g48570OsAffx.27370.1.S1_at11/115+27749734..27751250hypothetical protein
LOC_Os05g48580NANA5+27756107..27757192hypothetical protein
LOC_Os05g48590Os.8928.1.S1_at11/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48590Os.56074.1.S1_at1/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8928.1.S1_at--756--10271Chr05:27763152..27763176 (25 bp)
TTTGCTGTAGCAAGTTTCCGCTGAG
LOC_Os05g48590
Os.8928.1.S1_at--457--6811Chr05:27763118..27763142 (25 bp)
GTTTTACCTGAAGTATCTCCGCTAT
LOC_Os05g48590
Os.8928.1.S1_at--980--2471Chr05:27763051..27763075 (25 bp)
AACAGCCATTTTGCCTACGAGGTTG
LOC_Os05g48590
Os.8928.1.S1_at--977--4051Chr05:27763034..27763058 (25 bp)
CGAGGTTGTCTTGTGTCAATCTGTA
LOC_Os05g48590
Os.8928.1.S1_at--479--4771Chr05:27762975..27762999 (25 bp)
GCTGCTTAATGCTTCCTGTGTGATA
LOC_Os05g48590
Os.8928.1.S1_at--1155--10691Chr05:27762855..27762879 (25 bp)
TTGCGCCGATCTGTGTGGCAGCCAA
LOC_Os05g48590
Os.8928.1.S1_at--596--10051Chr05:27762758..27762782 (25 bp)
TAGTTGGGTGGATCTTCCCTATGCA
LOC_Os05g48590
Os.8928.1.S1_at--702--631Chr05:27762738..27762762 (25 bp)
ATGCATCTTTGCCTGAAACTCGTAG
LOC_Os05g48590
Os.8928.1.S1_at--99--8971Chr05:27762725..27762749 (25 bp)
TGAAACTCGTAGCTCTGAATCTCTG
LOC_Os05g48590
Os.8928.1.S1_at--735--3851Chr05:27762711..27762735 (25 bp)
CTGAATCTCTGATGACTATCCCTAT
LOC_Os05g48590
Os.8928.1.S1_at--1035--8271Chr05:27762676..27762700 (25 bp)
GGCATCTCTGCCTATCTCTGTAATA
LOC_Os05g48590
Target Sequence 
TTTGCTGTAGCAAGTTTCCGCTGAGGGGTGCAGTGTTTTACCTGAAGTATCTCCGCTATTAGTTTATTTACGTGTGTAGT
GAAATCTGTGGCGTATTGTAAAACAGCCATTTTGCCTACGAGGTTGTCTTGTGTCAATCTGTAGATGGTCGATTTTGTCT
TTGAAAGATCAAGTCAGGCTGCTTAATGCTTCCTGTGTGATACTTTCATCAATTCTCTCATATATATATTATCTGGAGTT
GCACTTGATATTGTATCCNCTNCNAATTACCAATCTTGTCAACACGTGGTTTTGATCTTGCGCCGATCTGTGTGGCAGCC
AATCTTGTTTTNCAGCCTGAAGCTCAAAANTCTGATGACTATCCCAACCTGGGAAANATAGCNNTTCTGCAGTGTAGTTG
GGTGGATCTTCCCTATGCATCTTTGCCTGAAACTCGTAGCTCTGAATCTCTGATGACTATCCCTATCCTTTTGGCTGGCA
TCTCTGCCTATCTCTGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis