Browse Element(s) Details


Os.49515.2.S1_x_at

Description gb:AK063407.1
DB_XREF= gi:32973425
TID=Os.49515.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A10, full insert sequence.
FL= gb:AK063407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4153011/11Single-strand binding protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed
LOC_Os03g41540OsAffx.10665.1.S1_x_at9/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55476.1.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55138.1.S1_x_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540OsAffx.10665.2.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41570NANA3+23073652..23077064transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49515.2.S1_x_at--86--2091Chr03:23048307..23048331 (25 bp)
ACATAGATCGGCTTCGCTTGTGGCA
LOC_Os03g41530
Os.49515.2.S1_x_at--290--7491Chr03:23048255..23048279 (25 bp)
GTGGGACAACCGACAATCCAAGCCA
LOC_Os03g41530
Os.49515.2.S1_x_at--79--3571Chr03:23048232..23048256 (25 bp)
CATACTCCTACTATCCTGATTTCAA
LOC_Os03g41530
Os.49515.2.S1_x_at--936--1611Chr03:23048187..23048211 (25 bp)
AGCTGTGGCTTCGTGCAGATGATCC
LOC_Os03g41530
Os.49515.2.S1_x_at--907--6271Chr03:23048170..23048194 (25 bp)
GATGATCCTCCTTGGGTAAGAAGAC
LOC_Os03g41530
Os.49515.2.S1_x_at--126--9711Chr03:23048065..23048089 (25 bp)
TCACAAGATTTTGACTGCTCTCCGT
LOC_Os03g41530
Os.49515.2.S1_x_at--708--4811Chr03:23048049..23048073 (25 bp)
GCTCTCCGTCTCAAGATTTTGGCTA
LOC_Os03g41530
Os.49515.2.S1_x_at--627--5191Chr03:23048011..23048035 (25 bp)
GAATTGCTTCATTCATCAGGTGCAT
LOC_Os03g41530
Os.49515.2.S1_x_at--1043--4831Chr03:23047963..23047987 (25 bp)
GCTAACTGGTCTCTTGATCTGCAAT
LOC_Os03g41530
Os.49515.2.S1_x_at--83--171Chr03:23047940..23047964 (25 bp)
ATTATTATGCCTAGCTTCACTGTAG
LOC_Os03g41530
Os.49515.2.S1_x_at--953--8691Chr03:23047832..23047856 (25 bp)
TGTGCGGTAACTCATGTACATGCAT
LOC_Os03g41530
Target Sequence 
ACATAGATCGGCTTCGCTTGTGGCAGGTCTTCTTCGCTAGCCCTTACGAATGGTGGGACAACCGACAATCCAAGCCATAC
TCCTACTATCCTGATTTCAAGCACAAGGACACTGGCGAGAAGCTGTGGCTTCGTGCAGATGATCCTCCTTGGGTAAGAAG
ACAGCTTGAATTGCAAGACCAACAACTGGCAGAGAATGGACACAGGGATGGTAGTAGGACACTGAAAAACCACACATGGA
AATCACAAGATTTTGACTGCTCTCCGTCTCAAGATTTTGGCTATTCTGATGACGAAGAATTGCTTCATTCATCAGGTGCA
TGATATGGGGAGATGTGAGATAATGCTAACTGGTCTCTTGATCTGCAATTATTATGCCTAGCTTCACTGTAGAACTCACT
TAGTTGTAGAGGATATAGAGTACTTATGTTAGCGTAGCAAGTTATTAATGGCTTGAATGGCGAATACTGGTAATGTGTGC
GGTAACTCATGTACATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49515.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis