Browse Element(s) Details


OsAffx.25327.1.S1_at

Description tigr:9629.m02257
TID=OsAffx.25327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2343011/11hypothetical protein
LOC_Os03g414801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23380Os.35285.1.S1_at11/111+13124419..13127422NB-ARC domain containing protein, expressed
LOC_Os01g23390OsAffx.11169.1.S1_at10/111+13127700..13128140hypothetical protein
LOC_Os01g23400NANA1+13129132..13129506hypothetical protein
LOC_Os01g23410NANA1+13131768..13134094hAT family dimerisation domain containing protein
LOC_Os01g23420OsAffx.13286.1.S1_at5/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23420OsAffx.13287.1.S1_at1/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23430OsAffx.25327.1.S1_at11/111+13146859..13151686hypothetical protein
LOC_Os01g23430OsAffx.25327.2.S1_at2/111+13146859..13151686hypothetical protein
LOC_Os01g23440Os.34746.2.S1_x_at4/111+13153384..13156610expressed protein
LOC_Os01g23460OsAffx.10633.1.S1_at4/111+13162788..13165269retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23470NANA1+13165547..13167988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g23480NANA1+13169311..13169778hypothetical protein
LOC_Os01g23490NANA1+13171396..13172894retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25327.1.S1_at--987--8351Chr01:13148106..13148130 (25 bp)
GGCGGTAAGGCCTGTAGAACCATCT
LOC_Os01g23430
OsAffx.25327.1.S1_at--190--5431Chr01:13148090..13148114 (25 bp)
GAACCATCTACGATAATTCGACCGG
LOC_Os01g23430
OsAffx.25327.1.S1_at--175--2852Chr03:23033059..23033082 (24 bp)
AAGTACAGCGGTGATCCCTTCTATT
LOC_Os03g41480
OsAffx.25327.1.S1_at--737--10211Chr01:13147696..13147720 (25 bp)
TATTCCGCATGCAAGTACCACTGGT
LOC_Os01g23430
OsAffx.25327.1.S1_at--449--6991Chr01:13147648..13147672 (25 bp)
GTACGCAGGATCCAGCCAACTGGTT
LOC_Os01g23430
OsAffx.25327.1.S1_at--1017--8071Chr01:13147438..13147460 (23 bp)
GGAGCTCACACATACAACACTGGAA
LOC_Os01g23430
OsAffx.25327.1.S1_at--790--2471Chr01:13147143..13147445 (25 bp)
AACACTGGAATGTACAGCCCCAAAC
LOC_Os01g23430
OsAffx.25327.1.S1_at--417--3951Chr01:13147102..13147126 (25 bp)
CGGCAGCACACAATCCTACGGAAAA
LOC_Os01g23430
OsAffx.25327.1.S1_at--290--9692Chr03:23032368..23032391 (24 bp)
TCACGAGATAGGACCGTCACAGCTT
NONE
OsAffx.25327.1.S1_at--1122--2011Chr01:13146983..13147007 (25 bp)
ACTACAGCCACGTTGATTTCAGCGG
LOC_Os01g23430
OsAffx.25327.1.S1_at--688--8771Chr01:13146902..13146926 (25 bp)
TGTTAGGACGTAGACCTCCAACTGG
LOC_Os01g23430
Target Sequence 
GGCGGTAAGGCCTGTAGAACCATCTACGATAATTCGACCGGACAATGAAGGAAGTACAGCGGTGATCCCTTCTATTCCGC
ATGCAAGTACCACTGGTCAATGGCAGGGAGGGTTTGCGCCGTACGCAGGATCCAGCCAACTGGTTCCCCCCATGCGTACA
GAAGCTGGAAGCTCGCAGTTCCAAGGAGGGTTTTCCGGTATACCTCAAATTAACATGCCCATGTTTTCAATGGGTACAAA
CGATCAGTGGCAAGGAGCTCACACATACAACACTGGAATGTACAGCCCCAAACAAAGGATGGAATATGCCGGCAGCACAC
AATCCTACGGAAAACCATGTAGCTACGGTGGGGGGTCGTCCACAGCACATCACGAGATAGGACCGTCACAGCTTGATGAA
CCGCCACCAATAACTCAGCCAACCCAAGACTACAGCCACGTTGATTTCAGCGGTGTTGAGGTGGTCCGTAGGTCTGTCCG
TGAAAGACATTCACCTGAAAGATTATCTTTGTTAGGACGTAGACCTCCAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis