Browse Element(s) Details


OsAffx.11169.1.S1_at

Description tigr:9629.m02253
TID=OsAffx.11169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2339010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23350OsAffx.2062.1.S1_at11/111+13112523..13113680hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_x_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23380Os.35285.1.S1_at11/111+13124419..13127422NB-ARC domain containing protein, expressed
LOC_Os01g23390OsAffx.11169.1.S1_at10/111+13127700..13128140hypothetical protein
LOC_Os01g23400NANA1+13129132..13129506hypothetical protein
LOC_Os01g23410NANA1+13131768..13134094hAT family dimerisation domain containing protein
LOC_Os01g23420OsAffx.13286.1.S1_at5/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23420OsAffx.13287.1.S1_at1/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23430OsAffx.25327.1.S1_at11/111+13146859..13151686hypothetical protein
LOC_Os01g23430OsAffx.25327.2.S1_at2/111+13146859..13151686hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11169.1.S1_at--760--6311NONE
GATGACGGGCATGATCTGATGAGTT
NONE
OsAffx.11169.1.S1_at--597--7671Chr01:13128039..13128063 (25 bp)
GGGTTGAGCAGTTTTGACATGATAA
LOC_Os01g23390
OsAffx.11169.1.S1_at--957--5011Chr01:13128046..13128070 (25 bp)
GCAGTTTTGACATGATAAGGCACCA
LOC_Os01g23390
OsAffx.11169.1.S1_at--926--10391Chr01:13128050..13128074 (25 bp)
TTTTGACATGATAAGGCACCAGGCG
LOC_Os01g23390
OsAffx.11169.1.S1_at--990--10731Chr01:13128052..13128076 (25 bp)
TTGACATGATAAGGCACCAGGCGAA
LOC_Os01g23390
OsAffx.11169.1.S1_at--535--5071Chr01:13128065..13128089 (25 bp)
GCACCAGGCGAAGACCTTTGCCTTA
LOC_Os01g23390
OsAffx.11169.1.S1_at--78--8391Chr01:13128071..13128095 (25 bp)
GGCGAAGACCTTTGCCTTAGCATTG
LOC_Os01g23390
OsAffx.11169.1.S1_at--1053--5351Chr01:13128074..13128098 (25 bp)
GAAGACCTTTGCCTTAGCATTGGTA
LOC_Os01g23390
OsAffx.11169.1.S1_at--1131--1371Chr01:13128076..13128100 (25 bp)
AGACCTTTGCCTTAGCATTGGTAGA
LOC_Os01g23390
OsAffx.11169.1.S1_at--89--1731Chr01:13128078..13128102 (25 bp)
ACCTTTGCCTTAGCATTGGTAGACG
LOC_Os01g23390
OsAffx.11169.1.S1_at--152--3671Chr01:13128086..13128110 (25 bp)
CTTAGCATTGGTAGACGGCATTGGC
LOC_Os01g23390
Target Sequence 
GATGACGGGCATGATCTGATGAGTTTGGGGTTGAGCAGTTTTGACATGATAAGGCACCAGGCGAAGACCTTTGCCTTAGC
ATTGGTAGACGGCATTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis