Browse Element(s) Details


Os.35285.1.S1_at

Description gb:AK068195.1
DB_XREF= gi:32978213
TID=Os.35285.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative stripe rust resistance protein (B1158F07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146B15, full insert sequence.
FL= gb:AK068195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2338011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23350OsAffx.2062.1.S1_at11/111+13112523..13113680hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_x_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23380Os.35285.1.S1_at11/111+13124419..13127422NB-ARC domain containing protein, expressed
LOC_Os01g23390OsAffx.11169.1.S1_at10/111+13127700..13128140hypothetical protein
LOC_Os01g23400NANA1+13129132..13129506hypothetical protein
LOC_Os01g23410NANA1+13131768..13134094hAT family dimerisation domain containing protein
LOC_Os01g23420OsAffx.13286.1.S1_at5/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23420OsAffx.13287.1.S1_at1/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23430OsAffx.25327.1.S1_at11/111+13146859..13151686hypothetical protein
LOC_Os01g23430OsAffx.25327.2.S1_at2/111+13146859..13151686hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35285.1.S1_at--792--1871Chr01:13124961..13124985 (25 bp)
ACGAGTCTCTTTTTCTAGCGACGGA
LOC_Os01g23380
Os.35285.1.S1_at--651--4431Chr01:13124898..13124922 (25 bp)
GCCATCAGTGGCCTTTGTTAACAGT
LOC_Os01g23380
Os.35285.1.S1_at--400--1371Chr01:13124796..13124820 (25 bp)
AGAGCATTTGCCTAGCCTGAAGCAT
LOC_Os01g23380
Os.35285.1.S1_at--800--3031Chr01:13124727..13124751 (25 bp)
AATCGCTTCTGTGAGGAACGCCGCT
LOC_Os01g23380
Os.35285.1.S1_at--1064--2591Chr01:13124711..13124735 (25 bp)
AACGCCGCTGAGATGGTTCACCCTA
LOC_Os01g23380
Os.35285.1.S1_at--10--891Chr01:13124653..13124677 (25 bp)
AGGCCATCTGATACGGTCTGGAGTT
LOC_Os01g23380
Os.35285.1.S1_at--1008--6991Chr01:13124605..13124629 (25 bp)
GTACACACTTGCACGGTACTTTCTG
LOC_Os01g23380
Os.35285.1.S1_at--878--10311Chr01:13124586..13124610 (25 bp)
TTTCTGCCGGATTTCTTTGTTGTGT
LOC_Os01g23380
Os.35285.1.S1_at--266--6771Chr01:13124546..13124570 (25 bp)
GTTAATGCCATTCTTTGTCACTCTG
LOC_Os01g23380
Os.35285.1.S1_at--1102--4331Chr01:13124506..13124530 (25 bp)
CCATGTCGTCGTTTTCTCAAAAGTA
LOC_Os01g23380
Os.35285.1.S1_at--482--3531Chr01:13124461..13124485 (25 bp)
CATCAACTGCTTGCCCTATAGGGAT
LOC_Os01g23380
Target Sequence 
ACGAGTCTCTTTTTCTAGCGACGGATTCAAAAGGCTTAAGCAGCTGAGCATCCAGGGCAGCTTGCCATCAGTGGCCTTTG
TTAACAGTTCCTTGCGAAAGGTTGAAGTTCTTGAGCTGAAGTACGAAAAAGGCATTTCAGATGGGTCAAATGGTGTGTCT
GGTATAGAGCATTTGCCTAGCCTGAAGCATGTATTGATTGAGTTCTCGCAGAAGGATGCTGGCGCCACTGCGACAATCGC
TTCTGTGAGGAACGCCGCTGAGATGGTTCACCCTAATCATCCAGATGTCTCTGTCAAAGTTGATGGAAAGGCCATCTGAT
ACGGTCTGGAGTTTGTTTCAGAGCAAGAGGGATATAGTACACACTTGCACGGTACTTTCTGCCGGATTTCTTTGTTGTGT
TGAATTGAGTTTTGAGTTAATGCCATTCTTTGTCACTCTGCTTATATATGTATGACCATGTCGTCGTTTTCTCAAAAGTA
CTTTGTTGCAGCAGCAACAGCATCAACTGCTTGCCCTATAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis