Browse Element(s) Details


OsAffx.23351.2.S1_x_at

Description tigr:9629.m02250
TID=OsAffx.23351.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2336011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23330Os.52323.1.S1_at2/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23330Os.47004.1.S1_at1/111+13084572..13091073retrotransposon protein, putative, unclassified
LOC_Os01g23340OsAffx.10659.2.S1_at10/111+13096564..13098440hypothetical protein
LOC_Os01g23340OsAffx.1436.1.S1_x_at2/111+13096564..13098440hypothetical protein
LOC_Os01g23350OsAffx.2062.1.S1_at11/111+13112523..13113680hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23360OsAffx.23351.2.S1_x_at11/111+13115904..13118630hypothetical protein
LOC_Os01g23370Os.34746.2.S1_x_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23370Os.34746.2.S1_at11/111+13120329..13123545hypothetical protein
LOC_Os01g23380Os.35285.1.S1_at11/111+13124419..13127422NB-ARC domain containing protein, expressed
LOC_Os01g23390OsAffx.11169.1.S1_at10/111+13127700..13128140hypothetical protein
LOC_Os01g23400NANA1+13129132..13129506hypothetical protein
LOC_Os01g23410NANA1+13131768..13134094hAT family dimerisation domain containing protein
LOC_Os01g23420OsAffx.13286.1.S1_at5/111+13138670..13141998Transposable element protein, putative, MuDR
LOC_Os01g23420OsAffx.13287.1.S1_at1/111+13138670..13141998Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23351.2.S1_x_at--207--2251Chr01:13116452..13116476 (25 bp)
AAATTCCCTCCTTTAGTCTGTATTG
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--536--9631Chr01:13116420..13116444 (25 bp)
TCAGGGAGTTTTCAAGCCACTTCTC
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--679--9071Chr01:13116393..13116417 (25 bp)
TGCTACCCAACCAATTATCTTCAGA
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--1070--1131Chr01:13116366..13116390 (25 bp)
AGTCCACTCCTATCCATGTTGGGAT
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--879--2291Chr01:13116329..13116353 (25 bp)
AAATGGATCATCGACATCCCCAAGT
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--613--9871Chr01:13116282..13116306 (25 bp)
TACTTGCCCTAGTCTTGCGAAGAAG
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--142--5051Chr01:13116258..13116282 (25 bp)
GCAGAAATCGATTCACCCTGATGGA
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--24--2931Chr01:13116127..13116151 (25 bp)
AAGGCCTTAGAAGAAGCCCACGCTT
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--349--6051Chr01:13116080..13116104 (25 bp)
GAGATACATACAGACACACCCAAGA
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--581--7631Chr01:13116033..13116057 (25 bp)
GGTGACAAGTTTCAAGCCCAGTAAA
LOC_Os01g23360
OsAffx.23351.2.S1_x_at--1038--5571Chr01:13115943..13115967 (25 bp)
GAAATGTGGTCTTCTTCTTGAGGAA
LOC_Os01g23360
Target Sequence 
AAATTCCCTCCTTTAGTCTGTATTGCTGTTGCTCAGGGAGTTTTCAAGCCACTTCTCCTTGCTACCCAACCAATTATCTT
CAGATCAGTCCACTCCTATCCATGTTGGGATCTTATCTCTATCAAATGGATCATCGACATCCCCAAGTTGCCCCAGCTCT
GCCCAAGTCCTACTTGCCCTAGTCTTGCGAAGAAGCAGAAATCGATTCACCCTGATGGAAAAAGGGTTGCAAAAGTTATG
TTTGCTTCATCTGAAATAACTAGTGATCCTGAGGTTAGGCAAGGGAGAGCAAGAAAGCACAAAATTCAAACCCCAGTTTC
TACTGAAGGCCTTAGAAGAAGCCCACGCTTCACTGGGCTTGGTGAGAAGCTGGAGATACATACAGACACACCCAAGAAGA
AAACTAAAGTGAAGCCAATGGTGACAAGTTTCAAGCCCAGTAAAGATGATAGAGTCAAGCATCTCCCCCCGGCCATCCCA
GTGGCCCAGCTGCAAAAGATTGGTCTTGAGAAATGTGGTCTTCTTCTTGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23351.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis