Browse Element(s) Details


Os.49524.1.S1_at

Description gb:AK058531.1
DB_XREF= gi:32968549
TID=Os.49524.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence.
FL= gb:AK058531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g399909/11Patatin-like phospholipase family protein, expressed
LOC_Os11g400091/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39960OsAffx.19264.1.S1_at11/1111+23318311..23318802hypothetical protein
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49524.1.S1_at--798--9611Chr11:23346038..23346062 (25 bp)
TCATCGACATCTTCACTCATGCTAG
LOC_Os11g39990
Os.49524.1.S1_at--1070--9551Chr11:23346047..23346071 (25 bp)
TCTTCACTCATGCTAGTGCTGACAT
LOC_Os11g39990
Os.49524.1.S1_at--504--1571NONE
AGCTACCTCCGTATTCAGGACGATT
NONE
Os.49524.1.S1_at--327--9291NONE
TCCGTATTCAGGACGATTCGCTGGA
NONE
Os.49524.1.S1_at--494--2792Chr11:23346858..23346882 (25 bp)
AAGATCGGCAAGGACCTTCTGACTA
LOC_Os11g39990
Os.49524.1.S1_at--836--5151Chr11:23346865..23346889 (25 bp)
GCAAGGACCTTCTGACTAAGCGAGT
LOC_Os11g39990
Os.49524.1.S1_at--41--1751Chr11:23346871..23346895 (25 bp)
ACCTTCTGACTAAGCGAGTGGCGAG
LOC_Os11g39990
Os.49524.1.S1_at--219--2091Chr11:23346901..23346925 (25 bp)
ACATCGACACCGGAGTATACGAGCC
LOC_Os11g39990
Os.49524.1.S1_at--914--3351Chr11:23346908..23346932 (25 bp)
CACCGGAGTATACGAGCCCGTTGAT
LOC_Os11g39990
Os.49524.1.S1_at--6--3391Chr11:23347099..23347123 (25 bp)
CAGCCTGTGATGTAGTAAGTGTGAT
LOC_Os11g39990
Os.49524.1.S1_at--24--9771Chr11:23347151..23347175 (25 bp)
TAATGTTGGTTTGGTTTTCAATAAT
LOC_Os11g39990
Target Sequence 
TCATCGACATCTTCACTCATGCTAGTGCTGACATGGTCGACATCCACGCGTCCGTTCTCTTCCAGTCTCTCTGCTGCGAG
AAGAGCTACCTCCGTATTCAGGACGATTCGCTGGAGGGGCACACGTCGTCGGTGGACATCGCGACGAAGGAGAACATGGA
GGCACTGATCAAGATCGGCAAGGACCTTCTGACTAAGCGAGTGGCGAGGGTGAACATCGACACCGGAGTATACGAGCCCG
TTGATGGAGAGGGCACCAACGAGGAGGCACTCGCTCGCTTTGCCAAGAAGCTCTCAGAGGAGAGAAGGCTACGCAGAAAC
AACCTCAGTTCCTCTTGAGCTGAGCTAAAGCTAAGTTAGCTAGCTAGCTCAGTTCTAGCTAAGCTAAGCTAAGATGTAAA
ATTAAGTAATACAGCCTGTGATGTAGTAAGTGTGATGTGGGTGAGGTATTATGCATATTGTAATAATGTTGGTTTGGTTT
TCAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis