Browse Element(s) Details


Os.49529.1.S1_at

Description gb:AK062869.1
DB_XREF= gi:32972887
TID=Os.49529.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C03, full insert sequence.
FL= gb:AK062869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43790OsAffx.15914.1.S1_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43790Os.24561.1.S1_s_at11/116+26359284..26373493Bromodomain containing protein, expressed
LOC_Os06g43800Os.12737.1.S1_at11/116+26375117..26378230methyltransferase, putative, expressed
LOC_Os06g43810Os.49529.1.S1_at11/116+26383997..26384661expressed protein
LOC_Os06g43820OsAffx.5095.1.S1_at10/116+26387053..26390622hypothetical protein
LOC_Os06g43830NANA6+26392281..26392499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840Os.17305.1.A1_s_at11/116+26398338..26404234Protein kinase domain containing protein, expressed
LOC_Os06g43850Os.12365.1.S1_at10/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850Os.57459.1.S1_x_at1/116+26407107..26409933ATP synthase delta chain, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49529.1.S1_at--473--3731Chr06:26384062..26384086 (25 bp)
CTACTACGGCGAGAGCTAGCTCGAT
LOC_Os06g43810
Os.49529.1.S1_at--1048--4491Chr06:26384108..26384132 (25 bp)
GCCGTCGTCGCTAAGGCACAGACTG
LOC_Os06g43810
Os.49529.1.S1_at--105--9711Chr06:26384119..26384143 (25 bp)
TAAGGCACAGACTGAGGACGACGGT
LOC_Os06g43810
Os.49529.1.S1_at--370--4531Chr06:26384422..26384446 (25 bp)
GCCCTAACTCTTCTTCACTATAGAG
LOC_Os06g43810
Os.49529.1.S1_at--827--1211Chr06:26384447..26384471 (25 bp)
AGATTAAACTGTGTACTCATGATTA
LOC_Os06g43810
Os.49529.1.S1_at--963--6991Chr06:26384459..26384483 (25 bp)
GTACTCATGATTAAACTACAGCATC
LOC_Os06g43810
Os.49529.1.S1_at--367--6551Chr06:26384495..26384519 (25 bp)
GATTATTACTACACTATTAGCTTAG
LOC_Os06g43810
Os.49529.1.S1_at--564--8151Chr06:26384521..26384545 (25 bp)
GGAAATGTTCCCATGGTTTCGACAC
LOC_Os06g43810
Os.49529.1.S1_at--810--10631Chr06:26384538..26384562 (25 bp)
TTCGACACATGGTTTCCTATGTAAT
LOC_Os06g43810
Os.49529.1.S1_at--753--3471Chr06:26384545..26384569 (25 bp)
CATGGTTTCCTATGTAATTCGATAC
LOC_Os06g43810
Os.49529.1.S1_at--1022--2231Chr06:26384589..26384613 (25 bp)
AAATTGGTGATGTATCCCAGAATTG
LOC_Os06g43810
Target Sequence 
CTACTACGGCGAGAGCTAGCTCGATGGAGGCATCGCCGCCGACGTCGCCGTCGTCGCTAAGGCACAGACTGAGGACGACG
GTGTGCTGCTGCTTCGGCTCGCCGGGGGAGCGGCGGANNGGGGAGAAGNTGAGGTGGAGGCGGCGGGTNGCCGCGGGGNA
GTTCGGGTACGACCCGCTCAGCTACGCGCTCAACTTCGACGATGGCGACGGCGACGACGACGCCGCAGACGACGCCGCCG
CGGCCTTCCGGTACAAGAACTTCTCCTCCCGGCTCCCGCCCTCGCCGGTGGCGGCGCCGGCGCGGCGGTCGACGGCCATC
GCCATCTCATGAACTGTACCCCACCTGTCTCCNCCTCCACGCCCTAACTCTTCTTCACTATAGAGAGATTAAACTGTGTA
CTCATGATTAAACTACAGCATCAAAAATTGTGAGATTATTACTACACTATTAGCTTAGAGGAAATGTTCCCATGGTTTCG
ACACATGGTTTCCTATGTAATTCGATACATATCGAGATGTTTGTGAAAAATTGGTGATGTATCCCAGAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis