Browse Element(s) Details


Os.49541.1.S1_at

Description gb:L24390.1
DB_XREF= gi:453691
GEN=PF1
TID=Os.49541.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49541 (NCBI UniGene Cluster)
UG_TITLE=Positive element factor 1 (PF1) mRNA, complete cds
DEF=Oryza sativa positive element factor 1 (PF1) mRNA, complete cds.
FL= gb:L24390.1 gb:AK068506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2373011/11AT hook motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49541.1.S1_at--834--9351Chr09:14105641..14105665 (25 bp)
TCGAACAGGAAGACCCCATTGGCGC
LOC_Os09g23730
Os.49541.1.S1_at--673--1671Chr09:14105508..14105532 (25 bp)
AGCCGCTGCTTGATTAGCTCCGATT
LOC_Os09g23730
Os.49541.1.S1_at--766--8471Chr09:14105467..14105491 (25 bp)
TGGCGACGATGGTAAGCTCCTTTAG
LOC_Os09g23730
Os.49541.1.S1_at--516--4411Chr09:14105452..14105476 (25 bp)
GCTCCTTTAGGTTGTAACGTAGTCT
LOC_Os09g23730
Os.49541.1.S1_at--448--9511Chr09:14105417..14105441 (25 bp)
TCTCGTACTGATTGGAGGCGCGGCT
LOC_Os09g23730
Os.49541.1.S1_at--1044--3931Chr09:14105397..14105421 (25 bp)
CGGCTCGGGTTGCTGCTTATTGTAA
LOC_Os09g23730
Os.49541.1.S1_at--398--6251Chr09:14105339..14105363 (25 bp)
GATGGATCATCCGTTGCTGAGAGTT
LOC_Os09g23730
Os.49541.1.S1_at--653--5211Chr09:14105308..14105332 (25 bp)
GAATTCGTGTTATCGCGTGCTGATT
LOC_Os09g23730
Os.49541.1.S1_at--474--2991Chr09:14105275..14105299 (25 bp)
AATGTTGGTGACTTTCGTGTCGTTT
LOC_Os09g23730
Os.49541.1.S1_at--829--10611Chr09:14105262..14105286 (25 bp)
TTCGTGTCGTTTGTGTTAATTCTAG
LOC_Os09g23730
Os.49541.1.S1_at--51--3151Chr09:14105245..14105269 (25 bp)
AATTCTAGATTGGTGGCTGCATTTA
LOC_Os09g23730
Target Sequence 
TCGAACAGGAAGACCCCATTGGCGCTCCCGCCGCAGCTTCGGCTCCCGCCGCGGCGGCTGAGGCCGCGCCGCCTGTCAAG
CGCGGCCGTGGGCGCCCGCCCAAGGTGAGACCCGCCGCGCCGGTCGGGGAGCCAGCCGCTGCTTGATTAGCTCCGATTCT
CCGCATCGCCGCGATGGCGACGATGGTAAGCTCCTTTAGGTTGTAACGTAGTCTTCAGATTATGTCTCGTACTGATTGGA
GGCGCGGCTCGGGTTGCTGCTTATTGTAAGTTAATCGGATGGTGGGAGGTTTAGGTGTGCTGGATGGATCATCCGTTGCT
GAGAGTTGTGNTTGAATTCGTGTTATCGCGTGCTGATTATTATGGTAATGTTGGTGACTTTCGTGTCGTTTGTGTTAATT
CTAGATTGGTGGCTGCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis