Browse Element(s) Details


Os.49549.1.S1_at

Description gb:AK072938.1
DB_XREF= gi:32982961
TID=Os.49549.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149N23, full insert sequence.
FL= gb:AK061266.1 gb:AK072938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5156011/11WRKY DNA binding domain containing protein, expressed
LOC_Os05g253601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51520Os.50883.1.S1_at9/114+30301276..30304461Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51530NANA4+30307162..30310450retrotransposon protein, putative, unclassified
LOC_Os04g51540NANA4+30311074..30317228retrotransposon protein, putative, unclassified
LOC_Os04g51550NANA4+30317862..30318772retrotransposon protein, putative, unclassified
LOC_Os04g51560Os.49549.1.S1_at11/114+30326094..30327436WRKY DNA binding domain containing protein, expressed
LOC_Os04g51570Os.55428.1.S1_at11/114+30331885..30333052IP05629p, putative, expressed
LOC_Os04g51580Os.13490.1.S1_at10/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.52574.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.46481.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51590Os.53290.1.S1_at1/114+30344883..30349190retrotransposon protein, putative, unclassified
LOC_Os04g51600OsAffx.26562.1.S1_at10/114+30350935..30352635hypothetical protein
LOC_Os04g51600Os.47086.1.S1_at1/114+30350935..30352635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49549.1.S1_at--326--4412Chr05:14645214..14645358 (25 bp)
GCCACTGCTCCAAGAGAAGGAAGAA
LOC_Os05g25360
Os.49549.1.S1_at--1114--1111Chr04:30326908..30326932 (25 bp)
AGTGCCGGCAATCAGCTCGAAGATC
LOC_Os04g51560
Os.49549.1.S1_at--451--551Chr04:30326939..30326963 (25 bp)
ATCCCGCCGGACGAATACTCGTGGA
LOC_Os04g51560
Os.49549.1.S1_at--660--5791Chr04:30326948..30326972 (25 bp)
GACGAATACTCGTGGAGGAAGTACG
LOC_Os04g51560
Os.49549.1.S1_at--955--1491Chr04:30327117..30327141 (25 bp)
AGCACAGTGAGAGGATGCCCCGCGC
LOC_Os04g51560
Os.49549.1.S1_at--756--7451Chr04:30327279..30327303 (25 bp)
GTGTCCACCGGCAACGGACATGTCT
LOC_Os04g51560
Os.49549.1.S1_at--577--8211Chr04:30327288..30327312 (25 bp)
GGCAACGGACATGTCTAACCTAATT
LOC_Os04g51560
Os.49549.1.S1_at--1125--7151Chr04:30327300..30327324 (25 bp)
GTCTAACCTAATTAGCTCCATAATT
LOC_Os04g51560
Os.49549.1.S1_at--335--10371Chr04:30327339..30327363 (25 bp)
TTTTTAGTTGCTTCTCATCAATCTA
LOC_Os04g51560
Os.49549.1.S1_at--283--4911Chr04:30327348..30327372 (25 bp)
GCTTCTCATCAATCTAATGATGCGT
LOC_Os04g51560
Os.49549.1.S1_at--1005--2751Chr04:30327395..30327419 (25 bp)
AAGAGGACGAGGGAAACTTGATGCT
LOC_Os04g51560
Target Sequence 
GCCACTGCTCCAAGAGAAGGAAGAACCGGGTGAAGAGGACGATCCGAGTGCCGGCAATCAGCTCGAAGATCGCCGACATC
CCGCCGGACGAATACTCGTGGAGGAAGTACGGCCAGAAACCCATCAAGGGCTCCCCNTANCCACGGGGCTACTACAAGTG
NAGCACAGTGAGAGGATGCCCCGCGCGGAAGCACGTGGAGCGCGCCACCGACGACCCGGCGATGCTGGTCGTGACCTACG
AGGGCGAGCACCGCCACACGCCGGGNCCCCTCCCGGCGCCACCCGCCGCCGCCGCCGTCGCCGCGATGCCGGTGTCCGTC
GCCGTGTCCACCGGCAACGGACATGTCTAACCTAATTAGCTCCATAATTTTTTTNTTCNTTTTTTTTTTAGTTGCTTCTC
ATCAATCTAATGATGCGTGTAAAGAAGAAAAGATTGTAGAAAGAGGACGAGGGAAACTTGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis