Browse Element(s) Details


Os.49574.1.S1_at

Description gb:AK101157.1
DB_XREF= gi:32986366
TID=Os.49574.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027K03, full insert sequence.
FL= gb:AK101157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0198011/11kinase interacting protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01950OsAffx.25962.1.S1_at11/113+570644..576389transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g01960Os.6668.1.S1_at11/113+577265..578305expressed protein
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01980Os.49574.1.S1_at11/113+588226..592776kinase interacting protein, putative, expressed
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49574.1.S1_at--22--5431Chr03:592206..592230 (25 bp)
GAACCGGGAGTGCTACGAGGCCATG
LOC_Os03g01980
Os.49574.1.S1_at--775--4671Chr03:592457..592481 (25 bp)
GCGGCCGGAAGGACGTCAAGTACAA
LOC_Os03g01980
Os.49574.1.S1_at--736--9071Chr03:592492..592516 (25 bp)
TGCTTCTGCCTCTAGTTTGGATTTT
LOC_Os03g01980
Os.49574.1.S1_at--621--4291Chr03:592500..592524 (25 bp)
CCTCTAGTTTGGATTTTGGCGGGAT
LOC_Os03g01980
Os.49574.1.S1_at--988--8571Chr03:592524..592548 (25 bp)
TGGTTTCTTTTTGGGTGGGTCAATG
LOC_Os03g01980
Os.49574.1.S1_at--924--7811Chr03:592541..592565 (25 bp)
GGTCAATGTTCATTTTACCCCTTGG
LOC_Os03g01980
Os.49574.1.S1_at--381--9591Chr03:592550..592574 (25 bp)
TCATTTTACCCCTTGGATTGTGATG
LOC_Os03g01980
Os.49574.1.S1_at--357--6611Chr03:592565..592589 (25 bp)
GATTGTGATGATATTGCGTGCAAGT
LOC_Os03g01980
Os.49574.1.S1_at--630--4611Chr03:592675..592699 (25 bp)
GCGAGAGGTTAATTAGCTTGTAAAA
LOC_Os03g01980
Os.49574.1.S1_at--732--10011Chr03:592688..592712 (25 bp)
TAGCTTGTAAAATGGATCAGTTGCA
LOC_Os03g01980
Os.49574.1.S1_at--401--7051Chr03:592721..592745 (25 bp)
GTAAAACTAGTGTACTGAGACTCAA
LOC_Os03g01980
Target Sequence 
GAACCGGGAGTGCTACGAGGCCATGGCGGCGTGGGAGGCGGAGAGGAAGGTGGGCCTCGCCGAGATCGAGCGGCTGCGCG
CGGACAACAAGCGGCTGGCCGCGGAGGCCGCCATGGCCGCCGCGGCGAGGCGGAAGCGGAAGGGCGGGAACGGAAGCGGG
TGGCTGTGGTGGGCGCGGGTGCGGATGGCGGCGGAGTGGACGCCGTGCGCGCCGGCGGTGAGGAAGGTCGGTGAGCGGAT
CAAGCACGGCGGCGGCCGGAAGGACGTCAAGTACAACGCCGGCGGCTGCTTCTGCCTCTAGTTTGGATTTTGGCGGGATG
GTTTCTTTTTGGGTGGGTCAATGTTCATTTTACCCCTTGGATTGTGATGATATTGCGTGCAAGTATCAAGGAGGGGAGTA
GTAATAGTAATCAGGTTATGGGATTATGCAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAAATTAATTAGCGAGAGGTTA
ATTAGCTTGTAAAATGGATCAGTTGCATGTTGGTGGTAAAACTAGTGTACTGAGACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis