Browse Element(s) Details


Os.49594.1.S1_at

Description gb:AK100274.1
DB_XREF= gi:32985483
TID=Os.49594.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072P03, full insert sequence.
FL= gb:AK100274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6752011/11VTC2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0019853biological_processL-ascorbic acid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49594.1.S1_at--921--6151Chr01:39573382..39573406 (25 bp)
GAGGATTTGTCCGATGTTGTTTCAA
LOC_Os01g67520
Os.49594.1.S1_at--825--2431Chr01:39573405..39573429 (25 bp)
AAAAGTCTGCATCTTCTTGCAAGAG
LOC_Os01g67520
Os.49594.1.S1_at--846--9671Chr01:39573432..39573456 (25 bp)
TAATAAACCTTTCAATGCCCTCATC
LOC_Os01g67520
Os.49594.1.S1_at--870--4531Chr01:39573448..39573472 (25 bp)
GCCCTCATCTCTGAATCTGGCAAGA
LOC_Os01g67520
Os.49594.1.S1_at--169--2791Chr01:39573469..39573492 (24 bp)
AAGAGAGTGTTCCTGCTACCACAGT
LOC_Os01g67520
Os.49594.1.S1_at--1065--6111Chr01:39573630..39573654 (25 bp)
GAGTGAGCCAAGAATTCCTCGACAT
LOC_Os01g67520
Os.49594.1.S1_at--193--1531Chr01:39573667..39573691 (25 bp)
AGCAGTCTGGGAGCTCAGTGGCCAT
LOC_Os01g67520
Os.49594.1.S1_at--321--9051Chr01:39573743..39573767 (25 bp)
TGCAGGTTTTTGGTCGAAGCGTCTC
LOC_Os01g67520
Os.49594.1.S1_at--5--5911Chr01:39573796..39573820 (25 bp)
GAGCTGCATCTTGGAGTTCCTGTCC
LOC_Os01g67520
Os.49594.1.S1_at--88--8711Chr01:39573816..39573840 (25 bp)
TGTCCAGTGCAGCTCCTGAAGAATA
LOC_Os01g67520
Os.49594.1.S1_at--509--2331Chr01:39573897..39573921 (25 bp)
AAAGTTGGCCCGAGTCTGTTCTTCA
LOC_Os01g67520
Target Sequence 
GAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGA
ATCTGGCAAGAGAGTGTTCCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCG
ACATGAGAATAAACCCAGCAGTCTGGGAGCTCAGTGGCCATTTGGTACTGAAGAGGAGGAAGGACTACGATGAAGCATCT
GAAGCAACCATATGCAGGTTTTTGGTCGAAGCGTCTCTGTCTGAATCAGAATTCCAAGAACTGAAGAGCTGCATCTTGGA
GTTCCTGTCCAGTGCAGCTCCTGAAGAATAAAGGAGGCCAAACAGTTATTCAGAGAGATACCGATTTGTAACCGTAGGTG
CAATAAAAAGTTGGCCCGAGTCTGTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis