Browse Element(s) Details


Os.49603.1.S1_at

Description gb:AK066466.1
DB_XREF= gi:32976484
TID=Os.49603.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065I19, full insert sequence.
FL= gb:AK066466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3334011/11expressed protein
LOC_Os06g333701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33320Os.53893.1.S1_at10/116+19400019..19405763extra-large G-protein, putative, expressed
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49603.1.S1_at--904--2971Chr06:19418391..19418415 (25 bp)
AATGTGGTCTACAGCTAGATTTTAT
LOC_Os06g33340
Os.49603.1.S1_at--104--10071Chr06:19418369..19418393 (25 bp)
TATGTTAAACCCTACTATGCCTCTT
LOC_Os06g33340
Os.49603.1.S1_at--19--10151Chr06:19418354..19418378 (25 bp)
TATGCCTCTTTGTGAGGTTCGCAGC
LOC_Os06g33340
Os.49603.1.S1_at--713--6151Chr06:19418341..19418365 (25 bp)
GAGGTTCGCAGCATCATTTAGTGAA
LOC_Os06g33340
Os.49603.1.S1_at--94--7371Chr06:19418321..19418345 (25 bp)
GTGAACACTTCTGTATATCAGACAT
LOC_Os06g33340
Os.49603.1.S1_at--43--6812Chr06:19438595..19438619 (25 bp)
GTTATTGTACTTTCTGTGTCATTGT
LOC_Os06g33370
Os.49603.1.S1_at--1123--10791Chr06:19418263..19418287 (25 bp)
TTGTATTATTTACCTCAGTCTGCAA
LOC_Os06g33340
Os.49603.1.S1_at--260--311Chr06:19418161..19418185 (25 bp)
ATACCACAACTTCTCAGTGCAACTT
LOC_Os06g33340
Os.49603.1.S1_at--920--7331Chr06:19418145..19418169 (25 bp)
GTGCAACTTAAAACACAGTCATTTT
LOC_Os06g33340
Os.49603.1.S1_at--703--3451Chr06:19418130..19418154 (25 bp)
CAGTCATTTTTTGTGTTCTCTTGTT
LOC_Os06g33340
Os.49603.1.S1_at--1040--6811Chr06:19418108..19418132 (25 bp)
GTTTATTGAGGTTTCTTTTGAGCAG
LOC_Os06g33340
Target Sequence 
AATGTGGTCTACAGCTAGATTTTATGTTAAACCCTACTATGCCTCTTTGTGAGGTTCGCAGCATCATTTAGTGAACACTT
CTGTATATCAGACATTCATATGGTCTAGTTATTGTACTTTCTGTGTCATTGTATTATTTACCTCAGTCTGCAATAGATAT
ATATGAATAATGATATCTTCAAAGTTTTATTATTTTTAGGTTGAAATTGTACATGACAAAATATGTACAAATACCACAAC
TTCTCAGTGCAACTTAAAACACAGTCATTTTTTGTGTTCTCTTGTTTATTGAGGTTTCTTTTGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis