Browse Element(s) Details


Os.49614.1.S1_at

Description gb:AK108077.1
DB_XREF= gi:32993286
TID=Os.49614.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E01, full insert sequence.
FL= gb:AK108077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3352011/11Root cap family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein
LOC_Os04g33560OsAffx.14115.1.S1_at11/114+20117176..20118793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49614.1.S1_at--130--2811Chr04:20094076..20094100 (25 bp)
AAGATCCCGGTCATGGGTAGCGCCG
LOC_Os04g33520
Os.49614.1.S1_at--116--8191Chr04:20094101..20094125 (25 bp)
GGAAGTACGCCGTTTCCGACATCTT
LOC_Os04g33520
Os.49614.1.S1_at--417--1651Chr04:20094235..20094259 (25 bp)
AGCGCCGGCCTGGTCTGCAAGAAGT
LOC_Os04g33520
Os.49614.1.S1_at--803--2731Chr04:20094274..20094298 (25 bp)
AAGTCGTAGAGCTGTTTTTTCTCGG
LOC_Os04g33520
Os.49614.1.S1_at--791--7071Chr04:20094327..20094351 (25 bp)
GTAATATATACGTGCTTAGCTGCTG
LOC_Os04g33520
Os.49614.1.S1_at--702--10451Chr04:20094342..20094366 (25 bp)
TTAGCTGCTGCTACGGTTATTAGTG
LOC_Os04g33520
Os.49614.1.S1_at--505--271Chr04:20094394..20094418 (25 bp)
ATAATTGTCGCGTGTTAGTCGTCGT
LOC_Os04g33520
Os.49614.1.S1_at--349--2872Chr04:20094447..20094471 (25 bp)
AAGTGTTTCTCACTTGTCAGTGCCG
LOC_Os04g33520
Os.49614.1.S1_at--744--6051Chr04:20094483..20094507 (25 bp)
GAGATTGCCCGGTTCAAACTTCAAA
LOC_Os04g33520
Os.49614.1.S1_at--210--511Chr04:20094508..20094532 (25 bp)
ATCGTGTCGTTGCAATCCTATATCC
LOC_Os04g33520
Os.49614.1.S1_at--989--251Chr04:20094527..20094551 (25 bp)
ATATCCTCTTTTGTAATCGTGTTTG
LOC_Os04g33520
Target Sequence 
AAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTCGCCACGGACTGCGAGGTGGCGCGCTTCGC
CGGCGAGGACGGCGCGCTCGCCTCGTCCGTTGGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCA
GCGCCGGCCTGGTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAATTACCTATAT
AAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTGGTAGTTCAAAGAATAAAAGATTTGGTGAT
AATTGTCGCGTGTTAGTCGTCGTCGAACGAGCAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGAT
TTAGGATGAGATTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis