Browse Element(s) Details


Os.49615.1.S1_at

Description gb:U77657.1
DB_XREF= gi:2062388
TID=Os.49615.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49615 (NCBI UniGene Cluster)
DEF=Oryza sativa pathogenesis-related thaumatin-like protein mRNA, complete cds.
PROD=pathogenesis-related thaumatin-like protein
FL= gb:U77657.1 gb:AK058637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4596011/11P21 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein
LOC_Os03g45960Os.49615.1.S1_at11/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45960OsAffx.20225.1.S1_x_at1/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49615.1.S1_at--233--10531Chr03:25926819..25926843 (25 bp)
TTCAGGCAGGACAGGTACTGCTGCA
LOC_Os03g45960
Os.49615.1.S1_at--656--951Chr03:25926812..25926836 (25 bp)
AGGACAGGTACTGCTGCACCGGATC
LOC_Os03g45960
Os.49615.1.S1_at--150--2131Chr03:25926809..25926833 (25 bp)
ACAGGTACTGCTGCACCGGATCGGC
LOC_Os03g45960
Os.49615.1.S1_at--1094--10591Chr03:25926654..25926678 (25 bp)
TTCTGCCCATGATCGAACGCGCGCG
LOC_Os03g45960
Os.49615.1.S1_at--941--511Chr03:25926611..25926635 (25 bp)
ATCGATCTCTGATGATCTTGGGATT
LOC_Os03g45960
Os.49615.1.S1_at--233--451Chr03:25926607..25926631 (25 bp)
ATCTCTGATGATCTTGGGATTTGTA
LOC_Os03g45960
Os.49615.1.S1_at--1120--6751Chr03:25926421..25926445 (25 bp)
GTTAATTACGTGTTCGATCAGCCAT
LOC_Os03g45960
Os.49615.1.S1_at--395--10471Chr03:25926416..25926440 (25 bp)
TTACGTGTTCGATCAGCCATATGTT
LOC_Os03g45960
Os.49615.1.S1_at--284--3991Chr03:25926413..25926437 (25 bp)
CGTGTTCGATCAGCCATATGTTATT
LOC_Os03g45960
Os.49615.1.S1_at--854--391Chr03:25926405..25926429 (25 bp)
ATCAGCCATATGTTATTATGCGTGT
LOC_Os03g45960
Os.49615.1.S1_at--735--10431Chr03:25926390..25926414 (25 bp)
TTATGCGTGTAACTATGGAAACTAT
LOC_Os03g45960
Target Sequence 
TTCAGGCAGGACAGGTACTGCTGCACCGGATCGGCGGCCAACAGCTGCGGCCCGACCAACTACTCGGAGTTCTTCAAGCG
GCTGTGCCCGGACGCCTACAGCTACCCCAAGGACGACGCCTCCAGCACCTACACTTGCCCGGCCGGCACCAACTACCAGG
TCGTCTTCTGCCCATGATCGAACGCGCGCGCGCGCGCGCGGCTGATCGATCGATCTCTGATGATCTTGGGATTTGTATGA
TCGATGCATGTGTGGATGTAACCGTGATATACGTACCTAAGAATAAGNNNGCACGCGCAAACGAGGATAAGTTTATGTTA
TCGATCTTTGAATAAGTAAAAACAACTGGGTTTATGAATTGATATATATGAACGATGACTTTCAGTAAGATAAACACGGT
TAATTACGTGTTCGATCAGCCATATGTTATTATGCGTGTAACTATGGAAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis