Browse Element(s) Details


Os.26902.1.S1_at

Description gb:AK069601.1
DB_XREF= gi:32979625
TID=Os.26902.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024H16, full insert sequence.
FL= gb:AK069601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4597011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein
LOC_Os03g45960Os.49615.1.S1_at11/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45960OsAffx.20225.1.S1_x_at1/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26902.1.S1_at--252--1051Chr03:25938290..25938314 (25 bp)
AGGGTAACGACTCCAGCTCTAAGGT
LOC_Os03g45970
Os.26902.1.S1_at--224--2911Chr03:25933095..25933118 (24 bp)
AAGGTTGGTCTATTTCATGTGCGTA
LOC_Os03g45970
Os.26902.1.S1_at--819--5331Chr03:25932932..25933044 (25 bp)
GAAGTCTTTCGCTGAGCTCGATGGC
LOC_Os03g45970
Os.26902.1.S1_at--202--6231Chr03:25932913..25932937 (25 bp)
GATGGCGACCTCCTGACGAACAGAA
LOC_Os03g45970
Os.26902.1.S1_at--479--6271Chr03:25932790..25932814 (25 bp)
GATGTCTGCAAGTCTGTTCGTGGTC
LOC_Os03g45970
Os.26902.1.S1_at--948--6711Chr03:25932775..25932799 (25 bp)
GTTCGTGGTCTTGATACATGATTTC
LOC_Os03g45970
Os.26902.1.S1_at--610--3511Chr03:25932759..25932783 (25 bp)
CATGATTTCTATTGTTGGGTTTCCA
LOC_Os03g45970
Os.26902.1.S1_at--648--2871Chr03:25932735..25932759 (25 bp)
AAGTGTGTGCTTGCAGTTGCACCCA
LOC_Os03g45970
Os.26902.1.S1_at--587--10692Chr03:25932702..25932726 (25 bp)
TTGCCACATTCTTGCGGTTTTACAC
LOC_Os03g45970
Os.26902.1.S1_at--667--10271Chr03:25932661..25932685 (25 bp)
TTTCGGTCGGGATCTCGTCAGGTGA
LOC_Os03g45970
Os.26902.1.S1_at--1093--931Chr03:25932636..25932660 (25 bp)
AGGAATCGCACTGATTTGCCTGCTG
LOC_Os03g45970
Target Sequence 
AGGGTAACGACTCCAGCTCTAAGGTTGATATCAAGGTTGGTCTATTTCATGTGCGTAAATGTACCAGAAGATTTATCACT
TTATCAGTACGGTTGTCTGGTGATATTGAAGTCTTTCGCTGAGCTCGATGGCGACCTCCTGACGAACAGAAGAGATGGTG
AGACGACAAGTTAGTACTGCATGTTGGAAGGAATGAAGTCTTTTNAGAGGAGTGGTGTTCAAAGTTTTTGGTCTGGCNGG
TTATACTCTGATGTCTGCAAGTCTGTTCGTGGTCTTGATACATGATTTCTATTGTTGGGTTTCCAAGTGTGTGCTTGCAG
TTGCACCCATTAGTCCCTTGCCACATTCTTGCGGTTTTACACCNATCCTTGTGNGAATTTTCGGTCGGGATCTCGTCAGG
TGAAGGAATCGCACTGATTTGCCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis