Browse Element(s) Details


Os.25461.1.S1_at

Description gb:AK102561.1
DB_XREF= gi:32987770
TID=Os.25461.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097I22, full insert sequence.
FL= gb:AK102561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g459908/11ferric leghemoglobin reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25461.1.S1_at--132--1831Chr03:25958179..25958203 (25 bp)
ACGCCTCTGGTAGTTGTGTCAAGTT
LOC_Os03g45990
Os.25461.1.S1_at--139--8791Chr03:25958262..25958286 (25 bp)
TGTTAAGCGTGTCCACACAACTGGG
LOC_Os03g45990
Os.25461.1.S1_at--1071--1451Chr03:25958325..25958349 (25 bp)
AGAAGATCCATTGCCTGTGTTGAAT
LOC_Os03g45990
Os.25461.1.S1_at--971--3871Chr03:25958382..25958406 (25 bp)
CTGTACCCAGTGTGGTGTATGCACA
LOC_Os03g45990
Os.25461.1.S1_at--762--6911Chr03:25958398..25958422 (25 bp)
GTATGCACACCAAGAGGTGGCCTCC
LOC_Os03g45990
Os.25461.1.S1_at--266--7731Chr03:25958413..25958437 (25 bp)
GGTGGCCTCCTTTGGCAAGATAGAA
LOC_Os03g45990
Os.25461.1.S1_at--251--10811Chr03:25958472..25958496 (25 bp)
TTGGGAAGTCCTCCCTGTTAGCACA
LOC_Os03g45990
Os.25461.1.S1_at--663--1491Chr03:25958491..25958515 (25 bp)
AGCACACAGGTGTTCGAAGGCGATT
LOC_Os03g45990
Os.25461.1.S1_at--407--1031Chr03:25958563..25958587 (25 bp)
AGGTAACATTCCATGGCTCGTGCAG
NONE
Os.25461.1.S1_at--328--1771Chr03:25958613..25958637 (25 bp)
ACCTGTCCTTTCTTTCCTATATATG
NONE
Os.25461.1.S1_at--75--7191Chr03:25958641..25958665 (25 bp)
GTCTGGCAGATTTTTGTCTACTACG
NONE
Target Sequence 
ACGCCTCTGGTAGTTGTGTCAAGTTAACTGTGGAGCCTGCAGCTGGTGGAGAGCAGAGTATTCTGGACGTTGTNGATGAC
AAATGTTAAGCGTGTCCACACAACTGGGGATGCTATACCCGGACCCATGCTTGCACATAAAGCTGAAGAAGATCCATTGC
CTGTGTTGAATTCATCGCAGGAAAAGGTCACTTAGATTATGAACTGTACCCAGTGTGGTGTATGCACACCAAGAGGTGGC
CTCCTTTGGCAAGATAGAAGAACAGGTGAAGGCATCAGGAGTGGCCTACCAGGTTGGGAAGTCCTCCCTGTTAGCACACA
GGTGTTCGAAGGCGATTGATGATGCTGAAGAGCTGGTCAAGGTCATGGCTGAGAAGCAGTGATGAGGTAACATTCCATGG
CTCGTGCAGATCTGAGCATGATGTGGTCTTGGCCACCTGTCCTTTCTTTCCTATATATGAATGTCTGGCAGATTTTTGTC
TACTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis