Browse Element(s) Details


Os.53437.1.S1_at

Description gb:AK072616.1
DB_XREF= gi:32982639
TID=Os.53437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133P22, full insert sequence.
FL= gb:AK072616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4598011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45960Os.49615.1.S1_at11/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45960OsAffx.20225.1.S1_x_at1/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53437.1.S1_at--1015--10331Chr03:25948545..25948569 (25 bp)
TTTACGAATTCCTATACACGCGCAA
LOC_Os03g45980
Os.53437.1.S1_at--368--2491Chr03:25948630..25948654 (25 bp)
AACAGCTCTCTGATTCTTCTAATGC
LOC_Os03g45980
Os.53437.1.S1_at--1152--6771Chr03:25948743..25948767 (25 bp)
GTTAGGCCGGTCAGCTGGTGCATAC
LOC_Os03g45980
Os.53437.1.S1_at--836--7771Chr03:25948759..25948783 (25 bp)
GGTGCATACCTATTTGCCTGGATCA
LOC_Os03g45980
Os.53437.1.S1_at--625--2571Chr03:25948783..25948807 (25 bp)
AACGGGAGCGTTGTCTGCCTTGGCA
LOC_Os03g45980
Os.53437.1.S1_at--22--10151Chr03:25948808..25948832 (25 bp)
TATGCCTCCTTTTTGTCCCTATGAA
LOC_Os03g45980
Os.53437.1.S1_at--162--331Chr03:25948910..25948934 (25 bp)
ATACTAGGTCTCTTTTTCCTGCTGA
LOC_Os03g45980
Os.53437.1.S1_at--581--6251Chr03:25948962..25948986 (25 bp)
GATGGTACATCCTTATTCAACTCTG
LOC_Os03g45980
Os.53437.1.S1_at--594--7071Chr03:25949003..25949027 (25 bp)
GTAATCAGATGCTCAGTTTTCACTA
LOC_Os03g45980
Os.53437.1.S1_at--331--6991Chr03:25949081..25949105 (25 bp)
GTACCCACATTTTCCTCTTGATATA
LOC_Os03g45980
Os.53437.1.S1_at--525--10151Chr03:25949104..25949128 (25 bp)
TATCTCTCTTATGCATTGGATCTCC
LOC_Os03g45980
Target Sequence 
TTTACGAATTCCTATACACGCGCAAAATTCTATCACAGAATTTGCGTTAATGAGAGTGTTCATAAGTGAGTTGCATCGAC
AACAAAACAGCTCTCTGATTCTTCTAATGCAGTCAAAGTACTGATTTACAGCTTTGGTTCTGAAGCTATTGATTTTCAAG
GACAAGAAAGTGTCTACCTGGAGGTACCTGTGATTACTGTTAGGCCGGTCAGCTGGTGCATACCTATTTGCCTGGATCAA
CGGGAGCGTTGTCTGCCTTGGCATATGCCTCCTTTTTGTCCCTATGAATGTGATACAGCTGCAGTTCAGAATGTTTTTTT
ATCGAATGCTGATGCTGCAGAAACTTCATGTTAGTTGTATTCCTTATACTAGGTCTCTTTTTCCTGCTGATACATCCCAA
AAAACCACAGTATAGTAGATGGTACATCCTTATTCAACTCTGGATATTTTCCTCTTTTGTAATCAGATGCTCAGTTTTCA
CTATCTTTGTTAATTCTGATGGGTACAATGATACCCCAGAGAGAGATGGTACAATGGTACCCACATTTTCCTCTTGATAT
ATCTCTCTTATGCATTGGATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis