Browse Element(s) Details


Os.53820.1.S1_at

Description gb:AK100254.1
DB_XREF= gi:32985463
TID=Os.53820.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061D21, full insert sequence.
FL= gb:AK100254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4593011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45910OsAffx.12942.3.S1_x_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45910OsAffx.12942.3.S1_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45920Os.11155.1.S1_at11/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45920Os.57140.1.S1_at1/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein
LOC_Os03g45960Os.49615.1.S1_at11/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45960OsAffx.20225.1.S1_x_at1/113+25926367..25927606P21 protein, putative, expressed
LOC_Os03g45970Os.26902.1.S1_at11/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.943.1.S1_at2/113+25932628..25944379expressed protein
LOC_Os03g45970OsAffx.20275.1.S1_at1/113+25932628..25944379expressed protein
LOC_Os03g45970Os.46805.1.S1_at1/113+25932628..25944379expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53820.1.S1_at--455--991Chr03:25915182..25915206 (25 bp)
AGGATTCGTCGGGTTCTTTCCGCAG
LOC_Os03g45930
Os.53820.1.S1_at--223--1291Chr03:25915298..25915322 (25 bp)
AGATCGATGGATTCTTCGCCGTCTT
LOC_Os03g45930
Os.53820.1.S1_at--613--9371Chr03:25915319..25915343 (25 bp)
TCTTTCCGCGGGAACGGAGGCGACA
LOC_Os03g45930
Os.53820.1.S1_at--1131--10451Chr03:25915357..25915381 (25 bp)
TTACAGCAATGCCACGCGGGTAGAA
LOC_Os03g45930
Os.53820.1.S1_at--152--10531Chr03:25915511..25915535 (25 bp)
TTCACCGTGCTTTGCGGCGTGTTCA
LOC_Os03g45930
Os.53820.1.S1_at--45--8371Chr03:25915526..25915550 (25 bp)
GGCGTGTTCATTAGCTCGGTTCAGA
LOC_Os03g45930
Os.53820.1.S1_at--344--5751Chr03:25915568..25915592 (25 bp)
GACGGCAACGGCGATCGGAGCTTTA
LOC_Os03g45930
Os.53820.1.S1_at--442--4631Chr03:25915578..25915602 (25 bp)
GCGATCGGAGCTTTACATGGTGGTT
LOC_Os03g45930
Os.53820.1.S1_at--905--3111Chr03:25915685..25915709 (25 bp)
AATATTTGTTCTTGTTGCTCGTGTC
LOC_Os03g45930
Os.53820.1.S1_at--686--10711Chr03:25915699..25915723 (25 bp)
TTGCTCGTGTCGTTCGTGCTTTGCA
LOC_Os03g45930
Os.53820.1.S1_at--238--7331Chr03:25915714..25915738 (25 bp)
GTGCTTTGCATTCATTCCTTACTGA
LOC_Os03g45930
Target Sequence 
AGGATTCGTCGGGTTCTTTCCGCAGCAGCGAAGGCAACCGAGGTGACGCCACGGCGACGGATTCCTCGGACTCTCGCCGT
GGAATGCGCACCAAGGCCGCGGACGCCTTCGTCGCCAGATCGATGGATTCTTCGCCGTCTTTCCGCGGGAACGGAGGCGA
CACGGACGCCGACGCTTACAGCAATGCCACGCGGGTAGAAATCGACGCGCCGGCCGATGTCCTCGCCGGAGACGGCGACG
CCGTGGGAGGGACCCGGTCCTCCGTCGCGCTCCTGGTCGTTGCCGTCGTTCTCGTAGGCCTCGTCGCCGGCAAGCTCCCG
GCCGTCGTGTTCACCGTGCTTTGCGGCGTGTTCATTAGCTCGGTTCAGAGATTGCCGGCGGGCGGTGACGGCAACGGCGA
TCGGAGCTTTACATGGTGGTTTAGGATCAAACCCAAAGATGTAAATTAGTGGCAGAAGAAAGGGGAGAGTTGAGTGACAA
AAGAAAGAAGCAGCAAATACATAAATATTTGTTCTTGTTGCTCGTGTCGTTCGTGCTTTGCATTCATTCCTTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis