Browse Element(s) Details


Os.11155.1.S1_at

Description gb:AB104733.1
DB_XREF= gi:34327939
GEN=OsTUB8
TID=Os.11155.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11155 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTUB8 mRNA for beta-tubulin, complete cds.
PROD=beta-tubulin
FL= gb:AK121321.1 gb:AB104733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4592011/11Tubulin beta-8 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45890OsAffx.3526.1.S1_x_at11/113+25876509..25876990hypothetical protein
LOC_Os03g45900NANA3+25886583..25886984hypothetical protein
LOC_Os03g45910OsAffx.12942.3.S1_x_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45910OsAffx.12942.3.S1_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45920Os.11155.1.S1_at11/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45920Os.57140.1.S1_at1/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11155.1.S1_at--854--10651Chr03:25900383..25900407 (25 bp)
TTCCTCCACTGGTACACCAGCGAGG
LOC_Os03g45920
Os.11155.1.S1_at--921--9211Chr03:25900387..25900411 (25 bp)
TCCACTGGTACACCAGCGAGGGAAT
LOC_Os03g45920
Os.11155.1.S1_at--137--9091Chr03:25900589..25900613 (25 bp)
TGCTACGCTACGCTACATATATTTC
LOC_Os03g45920
Os.11155.1.S1_at--420--1751Chr03:25900593..25900617 (25 bp)
ACGCTACGCTACATATATTTCGATC
LOC_Os03g45920
Os.11155.1.S1_at--958--1831Chr03:25900598..25900622 (25 bp)
ACGCTACATATATTTCGATCGGTAC
LOC_Os03g45920
Os.11155.1.S1_at--165--4851Chr03:25900600..25900624 (25 bp)
GCTACATATATTTCGATCGGTACAA
LOC_Os03g45920
Os.11155.1.S1_at--335--231Chr03:25900607..25900631 (25 bp)
ATATTTCGATCGGTACAAACACACA
LOC_Os03g45920
Os.11155.1.S1_at--1059--10291Chr03:25900610..25900634 (25 bp)
TTTCGATCGGTACAAACACACAATG
LOC_Os03g45920
Os.11155.1.S1_at--88--4051Chr03:25900613..25900637 (25 bp)
CGATCGGTACAAACACACAATGTGC
LOC_Os03g45920
Os.11155.1.S1_at--589--2411Chr03:25900623..25900647 (25 bp)
AAACACACAATGTGCCGTTGCCGTG
LOC_Os03g45920
Os.11155.1.S1_at--626--2191Chr03:25900627..25900651 (25 bp)
ACACAATGTGCCGTTGCCGTGTCTG
LOC_Os03g45920
Target Sequence 
TTCCTCCACTGGTACACCAGCGAGGGAATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTCGTCGC
CGAGTACCAGCAGTACCAGGACGCCACCGCCGAGGACGACTACGACGAGGACGACGACGCCGCCGCCGCCGACGAGGCCT
GATCGATCGATCGATCGATCCCTCCCGCTTTGCCTCTCTGGCTCTNCTGCTACGCTACGCTACATATATTTCGATCGGTA
CAAACACACAATGTGCCGTTGCCGTGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis