Browse Element(s) Details


OsAffx.3526.1.S1_x_at

Description tigr:9631.m04446
TID=OsAffx.3526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4589011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45860NANA3+25852844..25853164Auxin responsive protein
LOC_Os03g45870Os.5782.1.S1_at11/113+25862487..25864295expressed protein
LOC_Os03g45880NANA3+25866286..25866549hypothetical protein
LOC_Os03g45890OsAffx.3526.1.S1_x_at11/113+25876509..25876990hypothetical protein
LOC_Os03g45900NANA3+25886583..25886984hypothetical protein
LOC_Os03g45910OsAffx.12942.3.S1_x_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45910OsAffx.12942.3.S1_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45920Os.11155.1.S1_at11/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45920Os.57140.1.S1_at1/113+25896903..25900877Tubulin beta-8 chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3526.1.S1_x_at--842--991Chr03:25876543..25876567 (25 bp)
AGGTCGGAGGCATGGGCACCCGTGG
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--779--8011Chr03:25876548..25876572 (25 bp)
GGAGGCATGGGCACCCGTGGCGGCA
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--934--4191Chr03:25876561..25876585 (25 bp)
CCCGTGGCGGCAAGGTTGGAGGCAT
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--552--10851Chr03:25876576..25876600 (25 bp)
TTGGAGGCATGGCTCTTGCAGCCAC
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--188--6211Chr03:25876579..25876603 (25 bp)
GAGGCATGGCTCTTGCAGCCACGAG
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--226--5011Chr03:25876582..25876606 (25 bp)
GCATGGCTCTTGCAGCCACGAGGGC
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--343--8011Chr03:25876607..25876945 (25 bp)
GGAGGCGAGGCCCACAAATTTAAGT
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--545--4071Chr03:25876608..25876946 (25 bp)
GAGGCGAGGCCCACAAATTTAAGTG
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--156--891Chr03:25876928..25876947 (20 bp)
AGGCGAGGCCCACAAATTTAAGTGA
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--571--8371Chr03:25876928..25876948 (21 bp)
GGCGAGGCCCACAAATTTAAGTGAA
LOC_Os03g45890
OsAffx.3526.1.S1_x_at--1112--4611Chr03:25876928..25876949 (22 bp)
GCGAGGCCCACAAATTTAAGTGAAA
LOC_Os03g45890
Target Sequence 
AGGTCGGAGGCATGGGCACCCGTGGCGGCAAGGTTGGAGGCATGGCTCTTGCAGCCACGAGGGCGGAGGCGAGGCCCACA
AATTTAAGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3526.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis