Browse Element(s) Details


Os.5782.1.S1_at

Description gb:AK109543.1
DB_XREF= gi:32994752
TID=Os.5782.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C09, full insert sequence.
FL= gb:AK109543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4587011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45830OsAffx.25568.1.S1_at11/113+25838442..25838762Auxin responsive protein
LOC_Os03g45850NANA3+25847338..25849017Auxin responsive protein
LOC_Os03g45860NANA3+25852844..25853164Auxin responsive protein
LOC_Os03g45870Os.5782.1.S1_at11/113+25862487..25864295expressed protein
LOC_Os03g45880NANA3+25866286..25866549hypothetical protein
LOC_Os03g45890OsAffx.3526.1.S1_x_at11/113+25876509..25876990hypothetical protein
LOC_Os03g45900NANA3+25886583..25886984hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5782.1.S1_at--124--3851Chr03:25863235..25863259 (25 bp)
CTGCAGAAGCAGACGTGCCCGGCGA
LOC_Os03g45870
Os.5782.1.S1_at--870--6971Chr03:25863089..25863113 (25 bp)
GTACCACAGCGTGTGCACGATCGAG
LOC_Os03g45870
Os.5782.1.S1_at--4--2751Chr03:25862749..25862773 (25 bp)
AAGAAGCCCCGGATCGACCTCAACG
LOC_Os03g45870
Os.5782.1.S1_at--718--7871Chr03:25862721..25862745 (25 bp)
GGTTCCTCGGCACCTAGCTTTCCTA
LOC_Os03g45870
Os.5782.1.S1_at--86--551Chr03:25862680..25862704 (25 bp)
ATCGCCACGGTGGACACATGTGACT
LOC_Os03g45870
Os.5782.1.S1_at--213--8151Chr03:25862669..25862693 (25 bp)
GGACACATGTGACTAGCCATAGCTA
LOC_Os03g45870
Os.5782.1.S1_at--152--4211Chr03:25862629..25862653 (25 bp)
CCCCAATTCTGTTAGGAAATCAATG
LOC_Os03g45870
Os.5782.1.S1_at--382--2411Chr03:25862592..25862616 (25 bp)
AAACACGTACTCCATAGAACACGAG
LOC_Os03g45870
Os.5782.1.S1_at--397--1431Chr03:25862577..25862601 (25 bp)
AGAACACGAGGATGATCATGACGAT
LOC_Os03g45870
Os.5782.1.S1_at--127--6451Chr03:25862511..25862535 (25 bp)
GATCAAAAAGCATTTTCGCCCTTAA
LOC_Os03g45870
Os.5782.1.S1_at--1048--8431Chr03:25862496..25862520 (25 bp)
TCGCCCTTAAATCAACTTTTCCATT
LOC_Os03g45870
Target Sequence 
CTGCAGAAGCAGACGTGCCCGGCGACNCCGACAGACCTCAACCTCTTCCCCGTCCCCGGCGCCGCCGCGTCCGCCGCCAA
GCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGGCGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGT
GCACGATCGAGAAGGTGAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAGCACCAGCACCACCAGCACCAGCAGCACAGC
GCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCGGCGCCGAAGAAGAAGCCCCGGATCGAC
CTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCC
ATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACA
CGAGGATGATCATGACGATGATGATGATGATANTAGTANTCCTAGNTCCACTATGTAATTGATCAAAAAGCATTTTCGCC
CTTAAATCAACTTTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis