Browse Element(s) Details


OsAffx.25568.1.S1_at

Description tigr:9631.m04440
TID=OsAffx.25568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative auxin responsive protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4583011/11Auxin responsive protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45779Os.38196.1.A1_at11/113+25813713..25815145expressed protein
LOC_Os03g45790NANA3+25816601..25816906expressed protein
LOC_Os03g45800NANA3+25820346..25820702Auxin responsive protein
LOC_Os03g45810OsAffx.23366.2.S1_s_at1/113+25821990..25825596transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.7362.1.S1_x_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820Os.46314.3.S1_at2/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45820OsAffx.265.1.S1_at1/113+25827202..25830544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45830OsAffx.25568.1.S1_at11/113+25838442..25838762Auxin responsive protein
LOC_Os03g45850NANA3+25847338..25849017Auxin responsive protein
LOC_Os03g45860NANA3+25852844..25853164Auxin responsive protein
LOC_Os03g45870Os.5782.1.S1_at11/113+25862487..25864295expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25568.1.S1_at--503--5791Chr03:25838514..25838538 (25 bp)
GACGACAACGACGAATGCAATGTCT
LOC_Os03g45830
OsAffx.25568.1.S1_at--586--651Chr03:25838528..25838552 (25 bp)
ATGCAATGTCTTTCCGAGAGGGTAC
LOC_Os03g45830
OsAffx.25568.1.S1_at--758--3111Chr03:25838531..25838555 (25 bp)
CAATGTCTTTCCGAGAGGGTACGTA
LOC_Os03g45830
OsAffx.25568.1.S1_at--837--7391Chr03:25838534..25838558 (25 bp)
TGTCTTTCCGAGAGGGTACGTACCG
LOC_Os03g45830
OsAffx.25568.1.S1_at--313--10251Chr03:25838538..25838562 (25 bp)
TTTCCGAGAGGGTACGTACCGATAG
LOC_Os03g45830
OsAffx.25568.1.S1_at--134--6031Chr03:25838543..25838567 (25 bp)
GAGAGGGTACGTACCGATAGTCGCC
LOC_Os03g45830
OsAffx.25568.1.S1_at--996--7831Chr03:25838548..25838572 (25 bp)
GGTACGTACCGATAGTCGCCGGCAG
LOC_Os03g45830
OsAffx.25568.1.S1_at--416--1891Chr03:25838551..25838575 (25 bp)
ACGTACCGATAGTCGCCGGCAGCGG
LOC_Os03g45830
OsAffx.25568.1.S1_at--250--7311Chr03:25838589..25838613 (25 bp)
GTGCTGGTGCCGGTTAGTCTACTCG
LOC_Os03g45830
OsAffx.25568.1.S1_at--330--7631Chr03:25838614..25838638 (25 bp)
GGGACCCGTGCATCGCGGAGCTTCT
LOC_Os03g45830
OsAffx.25568.1.S1_at--254--8391Chr03:25838700..25838724 (25 bp)
GGCGAGCGTCTACGGCGAGTCGTGG
LOC_Os03g45830
Target Sequence 
GACGACAACGACGAATGCAATGTCTTTCCGAGAGGGTACGTACCGATAGTCGCCGGCAGCGGCGACGGGGAGCGCGTGCT
GGTGCCGGTTAGTCTACTCGGGGACCCGTGCATCGCGGAGCTTCTGGACATGGCGGTGCAGCAGTACGGGTACGGCCAGC
CGGGCGTGCTGCGGGTGCCCTGCGACGGCGAGCGTCTACGGCGAGTCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis