Browse Element(s) Details


Os.57140.1.S1_at

Description gb:AK111007.1
DB_XREF= gi:32996216
TID=Os.57140.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F06, full insert sequence.
FL= gb:AK111007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g459201/11Tubulin beta-8 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45890OsAffx.3526.1.S1_x_at11/113+25876509..25876990hypothetical protein
LOC_Os03g45900NANA3+25886583..25886984hypothetical protein
LOC_Os03g45910OsAffx.12942.3.S1_x_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45910OsAffx.12942.3.S1_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45920Os.11155.1.S1_at11/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45920Os.57140.1.S1_at1/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57140.1.S1_at--642--3791Chr06:22866109..22866317 (25 bp)
CTCCGAGAGTAGCAGACGACTTGCT
NONE
Os.57140.1.S1_at--485--5791Chr06:22866095..22866119 (25 bp)
GACGACTTGCTTTGTCTAGATACCA
NONE
Os.57140.1.S1_at--470--3631Chr06:22866090..22866114 (25 bp)
CTTGCTTTGTCTAGATACCAACTGC
NONE
Os.57140.1.S1_at--608--11Chr06:22865996..22866020 (25 bp)
AGAAACGGTAATGCCCAAACGAATG
NONE
Os.57140.1.S1_at--382--612Chr03:25898624..25898687 (25 bp)
ATGCCCAAACGAATGCTACTTTCTG
LOC_Os03g45920
Os.57140.1.S1_at--183--5272Chr06:22865976..22866000 (25 bp)
GAATGCTACTTTCTGCAAATGTCAC
NONE
Os.57140.1.S1_at--15--1031Chr06:22865921..22865945 (25 bp)
AGGTGGTATTCATGTTACACTTTGT
NONE
Os.57140.1.S1_at--929--9731Chr06:22865879..22865903 (25 bp)
TAATAATAATGTGTCCCGGCCAAGA
NONE
Os.57140.1.S1_at--912--4191Chr06:22865865..22865889 (25 bp)
CCCGGCCAAGAGATGCACAAAGAAA
NONE
Os.57140.1.S1_at--444--10211Chr06:22865834..22865858 (25 bp)
TATTACTTTTTGGAGTTGTGGGAAT
NONE
Os.57140.1.S1_at--111--5231Chr06:22865813..22865837 (25 bp)
GAATAAATTCTTGTACCTAAGTGCT
NONE
Target Sequence 
CTCCGAGAGTAGCAGACGACTTGCTTTGTCTAGATACCAACTGCAGCAGTAAATCGAGCTCTAACCGTGGTTGTAGGAAT
GTTCCTACTTGGAATAACTGAAGAAAAATAACAAGAAACGGTAATGCCCAAACGAATGCTACTTTCTGCAAATGTCACTA
ACCAAACTGGAGAAATGGGGAAAACATAAGGTGGTATTCATGTTACACTTTGTTGTTTTGATAAGGGAATTAATAATAAT
GTGTCCCGGCCAAGAGATGCACAAAGAAATCTTGTTATTACTTTTTGGAGTTGTGGGAATAAATTCTTGTACCTAAGTGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis