Browse Element(s) Details


Os.49620.1.S1_at

Description gb:AK103117.1
DB_XREF= gi:32988326
TID=Os.49620.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119G22, full insert sequence.
FL= gb:AK103117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3320011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33170Os.10731.1.A1_a_at11/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_x_at8/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_at7/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170Os.46610.1.S1_x_at5/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.4.S1_x_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.1.S1_at4/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.5.S1_x_at3/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33170OsAffx.31869.3.S1_s_at2/117+19799835..19803657retrotransposon protein, putative, unclassified
LOC_Os07g33180NANA7+19804829..19807073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g33190NANA7+19813123..19817329retrotransposon protein, putative, unclassified
LOC_Os07g33200Os.49620.1.S1_at11/117+19825595..19831501expressed protein
LOC_Os07g33210Os.56983.1.S1_at1/117+19836882..19840894expressed protein
LOC_Os07g33220Os.14331.1.S1_at11/117+19849290..19852778BNR/Asp-box repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49620.1.S1_at--566--6031Chr07:19830124..19830148 (25 bp)
GAGATCAATTTTACGAACCCGGTGC
LOC_Os07g33200
Os.49620.1.S1_at--287--8771Chr07:19830159..19830183 (25 bp)
TGTATCCAACCTATGCACGAGCAGA
LOC_Os07g33200
Os.49620.1.S1_at--850--651Chr07:19830171..19830195 (25 bp)
ATGCACGAGCAGATGCTAGGTCCGG
LOC_Os07g33200
Os.49620.1.S1_at--625--531Chr07:19830212..19830236 (25 bp)
ATCCGTGCCTTTGAGAGCAACTCAT
LOC_Os07g33200
Os.49620.1.S1_at--584--7611Chr07:19830268..19830292 (25 bp)
GGGAAGGATCCCATCACTACTTGCA
LOC_Os07g33200
Os.49620.1.S1_at--1019--3271Chr07:19830307..19830331 (25 bp)
CAAAAGGAGCTTTAGCACTGCTGCT
LOC_Os07g33200
Os.49620.1.S1_at--623--10331Chr07:19830317..19830341 (25 bp)
TTTAGCACTGCTGCTACTGGTGCAT
LOC_Os07g33200
Os.49620.1.S1_at--468--5852Chr07:19846944..19846968 (25 bp)
GACCAAATATTGACTTTTCTCTGAA
NONE
Os.49620.1.S1_at--477--1471Chr07:19831371..19831395 (25 bp)
AGAAGGCAATGACCCTCCTTCAATC
LOC_Os07g33200
Os.49620.1.S1_at--731--9231Chr07:19831386..19831410 (25 bp)
TCCTTCAATCTCAAGCTGCATCAGC
LOC_Os07g33200
Os.49620.1.S1_at--81--3571Chr07:19831404..19831428 (25 bp)
CATCAGCCCCTGTAATTCACAATAA
LOC_Os07g33200
Target Sequence 
GAGATCAATTTTACGAACCCGGTGCCCTGTGAAGGTGTATCCAACCTATGCACGAGCAGATGCTAGGTCCGGGCGTGATC
TTGAACAGATCCGTGCCTTTGAGAGCAACTCATCAATGGCCAAAAATCGTATACTTGGTTCAGTGGGAAGGATCCCATCA
CTACTTGCAAGCAATCATCAATCCAAAAGGAGCTTTAGCACTGCTGCTACTGGTGCATTCAGGCTCTTGAAGCTGTTGAA
GTAAAGCACGAGTACAAAAGGTTCTATAGTTGAGAGACCAAATATTGACTTTTCTCTGAAAATTAATTCACCTGTGACAG
ATCTAGCATGGGGGCTCCAATACCCTTGCCCGCTGGATCTTGAGGGAAGGAGGAAGAAGAGGGATTTGAGCAAGAAGGCA
ATGACCCTCCTTCAATCTCAAGCTGCATCAGCCCCTGTAATTCACAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis