Browse Element(s) Details


Os.49632.1.S1_a_at

Description gb:AB114419.1
DB_XREF= gi:40788411
TID=Os.49632.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) OsDRB2 mRNA for hypothetical protein, complete cds.
FL= gb:AB114419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3346011/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed
LOC_Os09g33460Os.49632.1.S1_a_at11/119+19710358..19712402Double-stranded RNA binding motif family protein, expressed
LOC_Os09g33464NANA9+19723592..19723891hypothetical protein
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49632.1.S1_a_at--929--7751Chr09:19711938..19711962 (25 bp)
GGTGAGCGTCCGTTCAGTGATCCCG
LOC_Os09g33460
Os.49632.1.S1_a_at--1129--6351Chr09:19712011..19712035 (25 bp)
GATCCAGCGACCTCATCCAAGAGGG
LOC_Os09g33460
Os.49632.1.S1_a_at--434--10051Chr09:19712054..19712078 (25 bp)
TAGTATCCAATCAATCGCGCAGCCT
LOC_Os09g33460
Os.49632.1.S1_a_at--600--4471Chr09:19712075..19712099 (25 bp)
GCCTGCTCCGATCTGAAGACGACGA
LOC_Os09g33460
Os.49632.1.S1_a_at--334--811Chr09:19712122..19712146 (25 bp)
ATGGGTAGCCATGAACTCTGCTTCT
LOC_Os09g33460
Os.49632.1.S1_a_at--505--5211Chr09:19712154..19712178 (25 bp)
GAATTTTGATCACAAGTCTCCCTGT
LOC_Os09g33460
Os.49632.1.S1_a_at--48--7171Chr09:19712169..19712193 (25 bp)
GTCTCCCTGTATATCTAAATCGTTG
LOC_Os09g33460
Os.49632.1.S1_a_at--45--2331Chr09:19712195..19712219 (25 bp)
AAAGTGATCAGCATTTCTTCTTCTT
LOC_Os09g33460
Os.49632.1.S1_a_at--670--511Chr09:19712298..19712322 (25 bp)
ATCGATCTCCTAGGGCTTCATTAGA
LOC_Os09g33460
Os.49632.1.S1_a_at--400--10551Chr09:19712314..19712338 (25 bp)
TTCATTAGAAGCCATCCATCCATGC
LOC_Os09g33460
Os.49632.1.S1_a_at--922--571Chr09:19712327..19712351 (25 bp)
ATCCATCCATGCTTTGTCGCATGAA
LOC_Os09g33460
Target Sequence 
GGTGAGCGTCCGTTCAGTGATCCCGGTCTGCGCCGCGCCACCGTCGCCGCGGCCGCCGCCGCGCAAGGAGGACGATCCAG
CGACCTCATCCAAGAGGGCGTAGTAGTAGTAAAAACTAGTATCCAATCAATCGCGCAGCCTGCTCCGATCTGAAGACGAC
GACGAGGAAGACGATGAGAGATCGATGGGTAGCCATGAACTCTGCTTCTTGCAGGGGAATTTTGATCACAAGTCTCCCTG
TATATCTAAATCGTTGCAAAGTGATCAGCATTTCTTCTTCTTCTCATCTCTTTGCTGCTGAAATCTTCAGAAAAGAAGCA
GACCATGAAGGATTGAAGATAGTTGAATATAGCTCGATCGATCGATCTCCTAGGGCTTCATTAGAAGCCATCCATCCATG
CTTTGTCGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49632.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis