Browse Element(s) Details


Os.49637.1.S1_at

Description gb:AK108702.1
DB_XREF= gi:32993911
TID=Os.49637.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H10, full insert sequence.
FL= gb:AK108702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g049501/11Copper amine oxidase, enzyme domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04914OsAffx.25863.1.S1_at11/114+2354771..2359394transposon protein, putative, unclassified
LOC_Os04g04930NANA4+2361613..2364933hypothetical protein
LOC_Os04g04940Os.45212.1.S1_x_at1/114+2366600..2371300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04950OsAffx.3724.1.S1_at11/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950OsAffx.16132.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950Os.49637.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04959NANA4+2391271..2391731NA
LOC_Os04g04970OsAffx.3725.1.S1_at9/114+2395160..2396190hypothetical protein
LOC_Os04g04980OsAffx.13673.1.S1_x_at11/114+2400936..2402175Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49637.1.S1_at--203--1151Chr10:16435565..16435585 (21 bp)
AGTCCGGCGGCCTCAGCAGGTTGTC
NONE
Os.49637.1.S1_at--1016--4711Chr10:16435680..16435704 (25 bp)
GCTGGATCTGGGAGCGCTGAGAAAA
NONE
Os.49637.1.S1_at--350--3331Chr10:16435779..16435803 (25 bp)
CACGATTGGCCAGGCCTTTTTGGCT
NONE
Os.49637.1.S1_at--67--8352Chr10:16435800..16435824 (25 bp)
GGCTGGCTATATTTGGCCAGTGCAA
NONE
Os.49637.1.S1_at--115--8171Chr10:16435827..16435851 (25 bp)
GGAACTTTGGCCAGTAGGATGGCTT
NONE
Os.49637.1.S1_at--486--4411Chr10:16435853..16435877 (25 bp)
GCCAGCCGGTTAGCCAGTCTATTGA
NONE
Os.49637.1.S1_at--990--9971Chr10:16435863..16435887 (25 bp)
TAGCCAGTCTATTGAAGCACGAATT
NONE
Os.49637.1.S1_at--500--10751Chr10:16435874..16435898 (25 bp)
TTGAAGCACGAATTTGAGCCAAAAT
NONE
Os.49637.1.S1_at--744--8811Chr10:16435935..16435959 (25 bp)
TGTTGAAGATGCTCCTAGAAGCCTA
NONE
Os.49637.1.S1_at--178--6351Chr10:16435942..16435966 (25 bp)
GATGCTCCTAGAAGCCTATGTTCTT
NONE
Os.49637.1.S1_at--546--4291Chr10:16435948..16435972 (25 bp)
CCTAGAAGCCTATGTTCTTTTATCC
NONE
Target Sequence 
AGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGG
GAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGGATCTGGGAGCGCTGAGAAAAAGCGATGCGGGAGGAG
AGGAAAAATCGCGGATCGGACGGGAGGGAGAGAGAATAGAGGGGAAAGCGGTGGGGCCCACGATTGGCCAGGCCTTTTTG
GCTGGCTATATTTGGCCAGTGCAAGGGGAACTTTGGCCAGTAGGATGGCTTGGCCAGCCGGTTAGCCAGTCTATTGAAGC
ACGAATTTGAGCCAAAATTGCTACAATTTAACTTAGAGAATGGAATAAGAAGGCTGTTGAAGATGCTCCTAGAAGCCTAT
GTTCTTTTATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis