Browse Element(s) Details


OsAffx.3724.1.S1_at

Description tigr:9632.m00406
TID=OsAffx.3724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxisomal copper-containing amine oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0495011/11Copper amine oxidase, enzyme domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04914OsAffx.25863.1.S1_at11/114+2354771..2359394transposon protein, putative, unclassified
LOC_Os04g04930NANA4+2361613..2364933hypothetical protein
LOC_Os04g04940Os.45212.1.S1_x_at1/114+2366600..2371300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04950OsAffx.3724.1.S1_at11/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950OsAffx.16132.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950Os.49637.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04959NANA4+2391271..2391731NA
LOC_Os04g04970OsAffx.3725.1.S1_at9/114+2395160..2396190hypothetical protein
LOC_Os04g04980OsAffx.13673.1.S1_x_at11/114+2400936..2402175Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3724.1.S1_at--497--5591Chr04:2379688..2379712 (25 bp)
GAAATCTGAACTCCAGGCCATGCGT
LOC_Os04g04950
OsAffx.3724.1.S1_at--187--891Chr04:2379674..2379698 (25 bp)
AGGCCATGCGTGATTGTCACCCTTC
LOC_Os04g04950
OsAffx.3724.1.S1_at--237--1751Chr04:2378201..2378225 (25 bp)
ACCTGGTTCAAACTGTCTTCCGTTG
LOC_Os04g04950
OsAffx.3724.1.S1_at--99--3571Chr04:2377725..2378024 (25 bp)
CATAGTTCTCTGGTACGTTTTCGGG
LOC_Os04g04950
OsAffx.3724.1.S1_at--118--10471Chr04:2377699..2377723 (25 bp)
TTACCCATGTCCCAAGGCTCGAAGA
LOC_Os04g04950
OsAffx.3724.1.S1_at--645--8311Chr04:2377684..2377708 (25 bp)
GGCTCGAAGACTGGCCTGTAATGCC
LOC_Os04g04950
OsAffx.3724.1.S1_at--216--8171Chr04:2377656..2377680 (25 bp)
GGAACACATCGGCTTCATGCTGAAG
LOC_Os04g04950
OsAffx.3724.1.S1_at--562--1211Chr04:2377554..2377578 (25 bp)
AGTTTTCTTGTCGTACATTGCTCCA
LOC_Os04g04950
OsAffx.3724.1.S1_at--817--6791Chr04:2377493..2377517 (25 bp)
GTTTTGGTTATACTCCAGCCAGATG
LOC_Os04g04950
OsAffx.3724.1.S1_at--44--6251Chr04:2377472..2377496 (25 bp)
GATGGATTCTTCGACTGCTCACCTG
LOC_Os04g04950
OsAffx.3724.1.S1_at--672--4091Chr04:2377443..2377467 (25 bp)
CGACGTGCCTCTTGGATCTGAAGTA
LOC_Os04g04950
Target Sequence 
GAAATCTGAACTCCAGGCCATGCGTGATTGTCACCCTTCATCTGCACGTTATTGGATTGTACGGAACACAAGGACTGTAA
ATCGTACTGGACAACCAACAGGCTACAAGCTCATACCTGGTTCAAACTGTCTTCCGTTGGCCCTGCCTGAGGCGAAATTC
CTGAGAAGAGCTGGATTCTTAAAGCATAATCTTTGGGTTACATCATACAAAAACGATGAGATGTACCCTGGAGGAGAGTT
TCCTAATCAGAACCCACGAATTAATGAAGGTTTAGCAACATGGGTAAAACAGGATAGATCCCTAGAGGAAACCAACATAG
TTCTCTGGTACGTTTTCGGGGTTACCCATGTCCCAAGGCTCGAAGACTGGCCTGTAATGCCAGTGGAACACATCGGCTTC
ATGCTGAAGATAGTTTTCTTGTCGTACATTGCTCCAGATAACATTACAACTCTGAACAATGGAACCCATATTGTTTTGGT
TATACTCCAGCCAGATGGATTCTTCGACTGCTCACCTGCGATCGACGTGCCTCTTGGATCTGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis