Browse Element(s) Details


Os.49645.1.S1_at

Description gb:AK101256.1
DB_XREF= gi:32986465
TID=Os.49645.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032G15, full insert sequence.
FL= gb:AK101256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g4000010/11expressed protein
LOC_Os06g260301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40010Os.31312.2.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40010Os.31312.5.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40014Os.33878.1.S1_at6/119+22958069..22961703hypothetical protein
LOC_Os09g40018Os.31312.5.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified
LOC_Os09g40018Os.31312.2.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49645.1.S1_at--257--8851Chr09:22938445..22938469 (25 bp)
TGATCTGACATTGGACGAACAAGAT
LOC_Os09g40000
Os.49645.1.S1_at--458--8111Chr09:22938457..22938481 (25 bp)
GGACGAACAAGATTACAGACATATG
LOC_Os09g40000
Os.49645.1.S1_at--1001--8051Chr09:22938494..22938518 (25 bp)
GGAGACATTAATTCATACCATAATT
LOC_Os09g40000
Os.49645.1.S1_at--866--3131Chr09:22938515..22938539 (25 bp)
AATTCACATTCCCAATAACTTCACC
LOC_Os09g40000
Os.49645.1.S1_at--355--10652Chr09:22938523..22938547 (25 bp)
TTCCCAATAACTTCACCCAAGCAAA
LOC_Os09g40000
Os.49645.1.S1_at--327--9771Chr09:22938602..22938626 (25 bp)
TAAGATACTATCTATTCAAGGAGAA
LOC_Os09g40000
Os.49645.1.S1_at--446--10091Chr09:22938631..22938655 (25 bp)
TAGGCTGTATAATTAACTTGACGCT
LOC_Os09g40000
Os.49645.1.S1_at--292--10491Chr09:22938643..22938667 (25 bp)
TTAACTTGACGCTGATTGAGGCTTA
LOC_Os09g40000
Os.49645.1.S1_at--1119--5791NONE
GACGCTGATTGAGGCTTAGTTAAGT
NONE
Os.49645.1.S1_at--779--10471Chr09:22938668..22938692 (25 bp)
TTAAGTGAGGAAGCCATTAGCGTTT
LOC_Os09g40000
Os.49645.1.S1_at--448--1671Chr09:22938679..22938703 (25 bp)
AGCCATTAGCGTTTTCTGTTTTTCT
LOC_Os09g40000
Target Sequence 
TGATCTGACATTGGACGAACAAGATTACAGACATATGGACAAAATATGTGGAGACATTAATTCATACCATAATTCACATT
CCCAATAACTTCACCCAAGCAAAAAAATATCTATCTTCCATACTGAAATACAATAATATATTATTGTATAATTAGCATAA
GATACTATCTATTCAAGGAGAAATTTTAGGCTGTATAATTAACTTGACGCTGATTGAGGCTTAGTTAAGTGAGGAAGCCA
TTAGCGTTTTCTGTTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis