Browse Element(s) Details


Os.49646.1.S1_at

Description gb:AK109775.1
DB_XREF= gi:32994984
TID=Os.49646.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B04, full insert sequence.
FL= gb:AK109775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3829011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0008393molecular_functionfatty acid (omega-1)-hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49646.1.S1_at--401--3971Chr02:23147538..23147562 (25 bp)
CGGTTCGCCTACACGCAGATGAAGA
LOC_Os02g38290
Os.49646.1.S1_at--207--8931Chr02:23147444..23147468 (25 bp)
TGACCACGACGCTGTACATGAAGAA
LOC_Os02g38290
Os.49646.1.S1_at--701--2571Chr02:23147421..23147445 (25 bp)
AACGGCCTCATGGTGCGCTTCAGGA
LOC_Os02g38290
Os.49646.1.S1_at--1016--1591Chr02:23147298..23147322 (25 bp)
AGCTGCAACAGTAACCATCTCTAAC
LOC_Os02g38290
Os.49646.1.S1_at--1007--7171Chr02:23147257..23147281 (25 bp)
GTCGTTACTCCGCATTGCTAATTAA
LOC_Os02g38290
Os.49646.1.S1_at--1117--2191Chr02:23147233..23147257 (25 bp)
ACAAACTACTCACACACATTGCTTT
LOC_Os02g38290
Os.49646.1.S1_at--862--9071Chr02:23147214..23147238 (25 bp)
TGCTTTCCCGCGCTAATTGTCATTA
LOC_Os02g38290
Os.49646.1.S1_at--352--5731Chr02:23147171..23147195 (25 bp)
GACTGGACTGATCGCTGTACTGTGA
LOC_Os02g38290
Os.49646.1.S1_at--447--1411Chr02:23147062..23147086 (25 bp)
AGACATTTCTGCTTACTACTCCGTA
LOC_Os02g38290
Os.49646.1.S1_at--977--6871Chr02:23147040..23147064 (25 bp)
GTATATTTTTCTTGCCTGTGTGACT
LOC_Os02g38290
Os.49646.1.S1_at--629--5731Chr02:23147019..23147043 (25 bp)
GACTGTGTATGTGTGTTCATCTCTG
LOC_Os02g38290
Target Sequence 
CGGTTCGCCTACACGCAGATGAAGACCGCGGCGGCGGCGGTGCTGTCCAGGTTCGCCGTCGAGGTGGTGCCCGGGCAGGA
GGTGAAGCCGAAGCTGACCACGACGCTGTACATGAAGAACGGCCTCATGGTGCGCTTCAGGAGGAGGTCGCCGCCGCCAC
CGTCGCCGCCGCCGCGCCACGTCGTCGCCGACGACGACGACGACGACGACGTTGCAGCCGGTCGCCACGTTGCTGTCGGA
AGCTGCAACAGTAACCATCTCTAACCAACCAAACAGTCTCTGTCGTTACTCCGCATTGCTAATTAACAAACTACTCACAC
ACATTGCTTTCCCGCGCTAATTGTCATTAGAAAATCGTAATCTCGAGGACTGGACTGATCGCTGTACTGTGAAACAGCTC
AAGAGTGAAGAGCAGCTGGTGCCGTCTCGCGCTGGACTACAGTGTGGCGGAAAAAGACGCGATCGATCAAATCATCAGAC
ATTTCTGCTTACTACTCCGTATATTTTTCTTGCCTGTGTGACTGTGTATGTGTGTTCATCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis