Browse Element(s) Details


Os.49660.1.S1_at

Description gb:AK063644.1
DB_XREF= gi:32973662
TID=Os.49660.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H05, full insert sequence.
FL= gb:AK063644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3356010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33520NANA2+19931793..19932983retrotransposon protein, putative, unclassified
LOC_Os02g33530NANA2+19933501..19935940retrotransposon protein, putative, unclassified, expressed
LOC_Os02g33540NANA2+19936642..19942502translational activator family protein, putative, expressed
LOC_Os02g33550Os.10576.1.S1_at11/112+19948702..19949786harpin-induced family protein, putative, expressed
LOC_Os02g33560Os.49660.1.S1_at10/112+19956730..19962055expressed protein
LOC_Os02g33570OsAffx.2843.1.S1_at11/112+19965631..19966110hypothetical protein
LOC_Os02g33580Os.27821.1.S1_s_at11/112+19967319..19971585digalactosyldiacylglycerol synthase 1, putative, expressed
LOC_Os02g33590Os.55653.1.S1_at8/112+19975666..19977308U-box domain containing protein, expressed
LOC_Os02g33590OsAffx.19551.1.S1_x_at5/112+19975666..19977308U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49660.1.S1_at--931--8251Chr02:19958262..19958286 (25 bp)
GGCAGATCACTAGTCTTCAGCAGGC
LOC_Os02g33560
Os.49660.1.S1_at--942--2911NONE
AAGGATGGCCAAACGCAGATGCTGA
NONE
Os.49660.1.S1_at--587--971Chr02:19957184..19957208 (25 bp)
AGGAGCGTCACCTCTTGCTTTGAGG
LOC_Os02g33560
Os.49660.1.S1_at--789--6171Chr02:19957147..19957171 (25 bp)
GAGGAGGAGACCCATCTGCGATCAA
LOC_Os02g33560
Os.49660.1.S1_at--866--9711Chr02:19957126..19957150 (25 bp)
TCAACTGGCAGATGCTCGACATGTC
LOC_Os02g33560
Os.49660.1.S1_at--969--4291Chr02:19957067..19957091 (25 bp)
CCTAGAGGCGGCTACGGCATGTGAA
LOC_Os02g33560
Os.49660.1.S1_at--470--5111Chr02:19957014..19957038 (25 bp)
GCACTGATCTTCACCTGTGACAGAA
LOC_Os02g33560
Os.49660.1.S1_at--363--1211Chr02:19956958..19956982 (25 bp)
AGTTCACTAACCTGACCAACCATAG
LOC_Os02g33560
Os.49660.1.S1_at--846--5971Chr02:19956875..19956899 (25 bp)
GAGAACATCAGTCGTTATCGCGGAA
LOC_Os02g33560
Os.49660.1.S1_at--197--5211Chr02:19956810..19956834 (25 bp)
GAATTCTGCAATGACTTCCATCGAA
LOC_Os02g33560
Os.49660.1.S1_at--863--4632Chr03:1477421..1477459 (24 bp)
GCGTCAGAGTTTGCAGCTTGTGCTT
NONE
Target Sequence 
GGCAGATCACTAGTCTTCAGCAGGCAAAACTAATTAAGGATGGCCAAACGCAGATGCTGAAGAAGGAAACCGAGAGGCTG
AAGCAGCTCTCAGTGCGCCACCGCAGGAGCAGGAGCGTCACCTCTTGCTTTGAGGCCAACTCATTTGGAGGAGGAGACCC
ATCTGCGATCAACTGGCAGATGCTCGACATGTCAAAGCTCAGCTTGAACGGCGGCGCTGTTGTTCCTCCTAGAGGCGGCT
ACGGCATGTGAAAATTTGACAGCAACAACNNNCAACATTGCCTGCACTGATCTTCACCTGTGACAGAATTGCTTGCAATA
TCATTAGTTTGTGGTTAACAGTTCACTAACCTGACCAACCATAGGTTTATTATTATGGGTCCATCTTTTAGGAGAGGGAG
ATTAAGAGAGGGAGAGAGTTGAGAGAACATCAGTCGTTATCGCGGAAGATTTGCTGAGGTTATCATGCAAGTTTTATCTT
TTTTGTAGAATTCTGCAATGACTTCCATCGAACACATATGAGATGAAGCAATCTTTGCATTGCTTAAATTGCTGTGTTTA
GCGTCAGAGTTTGCAGCTTGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis