Browse Element(s) Details

Os.49688.1.S1_at

Description

gb:AK103787.1
DB_XREF= gi:32988996
TID=Os.49688.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145I17, full insert sequence.
FL= gb:AK103787.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41390	9/11	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41360	Os.28418.1.S1_a_at	11/11	6	+	24788479..24792568	Ribose-phosphate pyrophosphokinase 2, putative, expressed
LOC_Os06g41370	NA	NA	6	+	24795550..24798356	hypothetical protein
LOC_Os06g41380	Os.57073.1.S1_at	11/11	6	+	24804549..24807592	expressed protein
LOC_Os06g41390	Os.5942.1.S1_at	11/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390	Os.49688.1.S1_at	9/11	6	+	24807830..24816725	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410	Os.35458.1.S1_at	11/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.15876.1.A1_at	9/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.36709.1.S1_x_at	3/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.8753.4.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	Os.6763.1.S1_x_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41410	OsAffx.5273.1.S1_at	1/11	6	+	24818856..24829136	expressed protein
LOC_Os06g41440	Os.5275.1.S1_at	10/11	6	+	24830707..24838945	legume lectins beta domain PF\|00139 containing protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0003676	molecular_function	nucleic acid binding
GO:0003700	molecular_function	transcription factor activity
GO:0008418	molecular_function	protein N-terminal asparagine amidohydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49688.1.S1_at--27--169	1	Chr06:24808405..24808429 (25 bp)	AGCCATCCGGGATAACGAGTCCAAC	LOC_Os06g41390
Os.49688.1.S1_at--388--487	1	Chr06:24808329..24808353 (25 bp)	GCTAGTGCTATGGTCACGGAGCTAA	LOC_Os06g41390
Os.49688.1.S1_at--15--483	1	Chr06:24808309..24808333 (25 bp)	GCTAATCGTCCGCATCAGTGGTAAT	LOC_Os06g41390
Os.49688.1.S1_at--726--131	1	NONE	AGAGGCTCCTGCACGTTTGGAGACA	NONE
Os.49688.1.S1_at--369--599	1	Chr06:24808178..24808202 (25 bp)	GAGACAGGTGTCATTTCGCCCATGG	LOC_Os06g41390
Os.49688.1.S1_at--71--737	1	Chr06:24808154..24808178 (25 bp)	GTGAAAGTGAGCTGCGCAAGCCGCC	LOC_Os06g41390
Os.49688.1.S1_at--297--567	1	Chr06:24808116..24808140 (25 bp)	GACATGCGTGTCGTGGCTTGGACTA	LOC_Os06g41390
Os.49688.1.S1_at--1124--827	1	Chr06:24808102..24808126 (25 bp)	GGCTTGGACTAGACGGCCAGCATAC	LOC_Os06g41390
Os.49688.1.S1_at--727--441	1	Chr06:24808087..24808111 (25 bp)	GCCAGCATACCTGAGCTCCAAATAT	LOC_Os06g41390
Os.49688.1.S1_at--400--377	1	Chr06:24807902..24807926 (25 bp)	CTCGGCGCTTCAGTCAAATTTTGTA	LOC_Os06g41390
Os.49688.1.S1_at--1099--1047	1	Chr06:24807830..24807854 (25 bp)	TTACTTGGGTGCTTTCTGATGCTTC	NONE

Target Sequence

AGCCATCCGGGATAACGAGTCCAACCCCAACCTCAAGAATATCGAGCTTGAGGGTACATTTGACCAGATCAAACATGCTA
GTGCTATGGTCACGGAGCTAATCGTCCGCATCAGTGGTAATGCCCCTCCAGCCAAGAACCCGGGCAGGGGGTCGCATGCT
GGGGGGCCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAACTTCAACAGAGGCTCCTGCACGTTTGGAGACAGGTGTCA
TTTCGCCCATGGTGAAAGTGAGCTGCGCAAGCCGCCGGCTGCTGCTTGAGACATGCGTGTCGTGGCTTGGACTAGACGGC
CAGCATACCTGAGCTCCAAATATGAAAACGATTGCACACAAGGTGAAAATGATATGTGCATTGTTGCTGCTTCTGCAGCA
TGAGATATTTTGTCATGGGAGGAAACTGGATGTAATCTGGGAGGAAATAGATAACAGGGAATTTCGGTGTCTTTGATTTG
TAGAATTACCTTGGAGTTTTTCCCTCGGCGCTTCAGTCAAATTTTGTAATGCTTCGAATGCACTATATAACCTAGCAAAA
CTACAATGATTCCATTTACTTGGGTGCTTTCTGATGCTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis