Browse Element(s) Details


Os.49696.1.S1_at

Description gb:AK102367.1
DB_XREF= gi:32987576
TID=Os.49696.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091K10, full insert sequence.
FL= gb:AK102367.1 gb:AK103110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3282011/11PDR-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32810NANA12+19797561..19798097hypothetical protein
LOC_Os12g32820Os.49696.1.S1_at11/1112+19804196..19808546PDR-like ABC transporter, putative, expressed
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49696.1.S1_at--361--5671Chr12:19804759..19804783 (25 bp)
GACTATACCTGTTATGGAACTTCCA
LOC_Os12g32820
Os.49696.1.S1_at--755--3591Chr12:19804740..19804764 (25 bp)
CTTCCAATTACGTTCCACAATCTGA
LOC_Os12g32820
Os.49696.1.S1_at--418--3731Chr12:19804719..19804743 (25 bp)
CTGAACTACTACATTGATACCCCAC
LOC_Os12g32820
Os.49696.1.S1_at--237--2471Chr12:19804540..19804564 (25 bp)
AACATAACTGGTGCATTGCGTCCCG
LOC_Os12g32820
Os.49696.1.S1_at--272--3871Chr12:19804517..19804541 (25 bp)
CGGTGTTCTTTCTGCACTAATGGGT
LOC_Os12g32820
Os.49696.1.S1_at--782--5871Chr12:19804485..19804509 (25 bp)
GAGCCGGGAAGACAACTCTGCTAGA
LOC_Os12g32820
Os.49696.1.S1_at--262--10091Chr12:19804368..19804392 (25 bp)
TAGGTTACTGTGAGCAAGCCGACAT
LOC_Os12g32820
Os.49696.1.S1_at--862--91Chr12:19804341..19804365 (25 bp)
ATTCCCCACAGCTCACAGTTGAAGA
LOC_Os12g32820
Os.49696.1.S1_at--111--7191Chr12:19804316..19804340 (25 bp)
GTCTGTAACTTATTCTGCTTGGCTT
LOC_Os12g32820
Os.49696.1.S1_at--239--9411Chr12:19804292..19804316 (25 bp)
TCGTCTACCTTCTCATGTCGACAAA
LOC_Os12g32820
Os.49696.1.S1_at--468--2411Chr12:19804266..19804290 (25 bp)
AAACAAGATCTGTATGTCCCTTGGA
LOC_Os12g32820
Target Sequence 
GACTATACCTGTTATGGAACTTCCAATTACGTTCCACAATCTGAACTACTACATTGATACCCCACCGGAAATGCTGAAAC
AAGGCTATCCAACAAAAAGACTTCAACTACTTAACAACATAACTGGTGCATTGCGTCCCGGTGTTCTTTCTGCACTAATG
GGTGTCAGTGGAGCCGGGAAGACAACTCTGCTAGATGTATTAGCAGGAAGGAAAACAGGAGGATATATTGAAGGGGACAT
AAGAATAGGTGGATATCCCAAGGTGCAAGAAACATTTGTTAGAATCTTAGGTTACTGTGAGCAAGCCGACATACATTCCC
CACAGCTCACAGTTGAAGAGTCTGTAACTTATTCTGCTTGGCTTCGTCTACCTTCTCATGTCGACAAAAAAACAAGATCT
GTATGTCCCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis