Browse Element(s) Details


Os.4972.1.S1_at

Description gb:AK111336.1
DB_XREF= gi:32996545
TID=Os.4972.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F03, full insert sequence.
FL= gb:AK111336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4228011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4972.1.S1_at--154--7691Chr07:25303664..25303688 (25 bp)
GGGTCCGACTCGTAGCCGTCTGGTT
LOC_Os07g42280
Os.4972.1.S1_at--902--1671Chr07:25303677..25303701 (25 bp)
AGCCGTCTGGTTTTGTGTTTGTAAT
LOC_Os07g42280
Os.4972.1.S1_at--1132--6011Chr07:25303714..25303738 (25 bp)
GAGAGTATTCGAGTGTACATAGATA
LOC_Os07g42280
Os.4972.1.S1_at--720--2411Chr07:25303756..25303780 (25 bp)
AAAAAAGCCCGTGCATCTCCATACT
LOC_Os07g42280
Os.4972.1.S1_at--717--7331Chr07:25303766..25303790 (25 bp)
GTGCATCTCCATACTGTACAGCTTG
LOC_Os07g42280
Os.4972.1.S1_at--989--6451Chr07:25303790..25303814 (25 bp)
GATCAAGGATGGTCACTTGGTCAGG
LOC_Os07g42280
Os.4972.1.S1_at--646--391Chr07:25303817..25303841 (25 bp)
ATCAGGTCGGTCGTTGGTTGTACAA
LOC_Os07g42280
Os.4972.1.S1_at--1096--7011Chr07:25303836..25303860 (25 bp)
GTACAATTTACCCATGAAAAAGCCA
LOC_Os07g42280
Os.4972.1.S1_at--631--2311Chr07:25303886..25303910 (25 bp)
AAAGTCCAAACGTTCTGGTGCTGGT
LOC_Os07g42280
Os.4972.1.S1_at--417--9131Chr07:25303904..25303928 (25 bp)
TGCTGGTTTAGAGACATTTGTGGGT
LOC_Os07g42280
Os.4972.1.S1_at--1109--10731Chr07:25303938..25303962 (25 bp)
TTGAGGAATCAAGCCATTTATGGGA
LOC_Os07g42280
Target Sequence 
GGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTT
TGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGNGATCAGGT
CGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGNCCTCTCCAAAGTCCAAACGTTCTGG
TGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTTTGAGGAATCAAGCCATTTATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis