Browse Element(s) Details


Os.6411.1.S1_a_at

Description gb:AB032062.1
DB_XREF= gi:15022419
GEN=OsPAA2
TID=Os.6411.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6411 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAA2 mRNA for alpha 1-2 subunit of 20S proteasome, complete cds.
PROD=alpha 1-2 subunit of 20S proteasome
FL= gb:AB032062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4226011/11Proteasome subunit alpha type 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42210Os.35344.18.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210Os.35344.3.S1_x_at10/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_at7/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42210OsAffx.22940.5.S1_x_at5/117+25260912..25269431transposon protein, putative, Mutator sub-class
LOC_Os07g42220OsAffx.16682.1.S1_at11/117+25271689..25272287expressed protein
LOC_Os07g42234NANA7+25273996..25279369retrotransposon protein, putative, unclassified
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6411.1.S1_a_at--114--1591Chr07:25289737..25289761 (25 bp)
AGCTCTTCACATGTGATCCAGCTGG
LOC_Os07g42260
Os.6411.1.S1_a_at--40--9231Chr07:25289721..25289745 (25 bp)
TCCAGCTGGACAATTCTTTGCACAC
LOC_Os07g42260
Os.6411.1.S1_a_at--230--2231Chr07:25289456..25289477 (22 bp)
ACAAGGCCACAAGTGCTGGTCCGAA
LOC_Os07g42260
Os.6411.1.S1_a_at--529--2371Chr07:25289388..25289412 (25 bp)
AAACCTTCTCTATCATCTGGCACAA
LOC_Os07g42260
Os.6411.1.S1_a_at--611--2271Chr07:25288710..25288734 (25 bp)
AAATCTGCGTTGAAACATGTCCTGG
LOC_Os07g42260
Os.6411.1.S1_a_at--221--2571Chr07:25288365..25288389 (25 bp)
AACTGTAACTCTGCACCCAGTGAAA
LOC_Os07g42260
Os.6411.1.S1_a_at--777--8111Chr07:25288288..25288312 (25 bp)
GGACGATCACCAGTCTTTCAAATCT
LOC_Os07g42260
Os.6411.1.S1_a_at--686--1771Chr07:25288233..25288257 (25 bp)
ACCGCTAACTGATTACTGTACGCTA
LOC_Os07g42260
Os.6411.1.S1_a_at--558--271Chr07:25288203..25288227 (25 bp)
ATATGTATGACTGCGCTCAAGCTGT
LOC_Os07g42260
Os.6411.1.S1_a_at--887--4571Chr07:25288191..25288215 (25 bp)
GCGCTCAAGCTGTGTCAAGTGTCAA
LOC_Os07g42260
Os.6411.1.S1_a_at--96--4211Chr07:25288155..25288179 (25 bp)
CCCCGGATTTACGATACCAACTGAT
LOC_Os07g42260
Target Sequence 
AGCTCTTCACATGTGATCCAGCTGGACAATTCTTTGCACACAAGGCCACAAGTGCTGGTCCGAAAGAGAAGGAAGTTATG
AACTTTCTTGAGGAAAGAATGAAGAGCAAACCTTCTCTATCATCTGGCACAACAAAAGGGTTGGCAAAATCTGCGTTGAA
ACATGTCCTGGAGGGGGATTTCTATGCCCGAGAATTTGAGCTTGGATTTATCAAGAAAGGGGATCCAACTGTAACTCTGC
ACCCAGTGAAATTCAAGCGCACGCGGAGGTGAAGGACGAGAGCAGAACAAAGTGCTCGATATAGGACGATCACCAGTCTT
TCAAATCTTTTACAGCATGGAAGTTATGCAAAACCATTACCGCTAACTGATTACTGTACGCTATAGCTATATGTATGACT
GCGCTCAAGCTGTGTCAAGTGTCAATTATGAGTTGCCCCCGGATTTACGATACCAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6411.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis