Browse Element(s) Details


OsAffx.5608.1.S1_at

Description tigr:9635.m04239
TID=OsAffx.5608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SPX domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4233011/11SPX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5608.1.S1_at--1126--5591Chr07:25325913..25325937 (25 bp)
GACAAGATCGACTCCTTCTTCCTCG
LOC_Os07g42330
OsAffx.5608.1.S1_at--239--2811Chr07:25325910..25325934 (25 bp)
AAGATCGACTCCTTCTTCCTCGAGC
LOC_Os07g42330
OsAffx.5608.1.S1_at--386--10631Chr07:25325874..25325898 (25 bp)
TTCGTCATCCGCCATAGGGCACGTA
LOC_Os07g42330
OsAffx.5608.1.S1_at--797--11Chr07:25325861..25325885 (25 bp)
ATAGGGCACGTACACCAATTCGCTT
LOC_Os07g42330
OsAffx.5608.1.S1_at--849--1871Chr07:25325854..25325878 (25 bp)
ACGTACACCAATTCGCTTCAATTCG
LOC_Os07g42330
OsAffx.5608.1.S1_at--181--2171Chr07:25325850..25325874 (25 bp)
ACACCAATTCGCTTCAATTCGTTTG
LOC_Os07g42330
OsAffx.5608.1.S1_at--857--91Chr07:25325788..25325868 (25 bp)
ATTCGCTTCAATTCGTTTGAGTTGC
LOC_Os07g42330
OsAffx.5608.1.S1_at--109--9751Chr07:25325781..25325861 (25 bp)
TCAATTCGTTTGAGTTGCAGGAGGC
LOC_Os07g42330
OsAffx.5608.1.S1_at--125--4031Chr07:25325775..25325855 (25 bp)
CGTTTGAGTTGCAGGAGGCGATCAA
LOC_Os07g42330
OsAffx.5608.1.S1_at--976--3031Chr07:25325717..25325741 (25 bp)
AATCCGGCGGGAGATCGTGGACTTC
LOC_Os07g42330
OsAffx.5608.1.S1_at--771--9271Chr07:25325715..25325739 (25 bp)
TCCGGCGGGAGATCGTGGACTTCCA
LOC_Os07g42330
Target Sequence 
GACAAGATCGACTCCTTCTTCCTCGAGCAGGAGGAGGAGTTCGTCATCCGCCATAGGGCACGTACACCAATTCGCTTCAA
TTCGTTTGAGTTGCAGGAGGCGATCAAGAAGGCGGCGGAGGCGGCGGCGGAGGTGGCCGGAATCCGGCGGGAGATCGTGG
ACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis