Browse Element(s) Details


OsAffx.28872.1.S1_at

Description tigr:9635.m04242
TID=OsAffx.28872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4235410/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28872.1.S1_at--713--9271Chr07:25335474..25335498 (25 bp)
TCCGATTTTAGAGTTTTATCCTTGC
LOC_Os07g42354
OsAffx.28872.1.S1_at--786--6072Chr07:25335484..25335508 (25 bp)
GAGTTTTATCCTTGCATGACATTGC
LOC_Os07g42354
OsAffx.28872.1.S1_at--769--4991Chr07:25335497..25335521 (25 bp)
GCATGACATTGCAATACTGATTCTT
LOC_Os07g42354
OsAffx.28872.1.S1_at--478--3871Chr07:25335513..25335930 (25 bp)
CTGATTCTTGTGCAGTGTTCTTTCA
LOC_Os07g42354
OsAffx.28872.1.S1_at--956--111Chr07:25335516..25335933 (25 bp)
ATTCTTGTGCAGTGTTCTTTCATTG
LOC_Os07g42354
OsAffx.28872.1.S1_at--1015--4371NONE
CCAACTGAGATGTATGTTTCTTGTG
NONE
OsAffx.28872.1.S1_at--858--6451Chr07:25336851..25336875 (25 bp)
GATAATCTGCTTTGTGAGGCACATG
LOC_Os07g42354
OsAffx.28872.1.S1_at--1067--6191Chr07:25336866..25336890 (25 bp)
GAGGCACATGAAGCTGGAGATATCT
LOC_Os07g42354
OsAffx.28872.1.S1_at--464--8011Chr07:25336881..25336905 (25 bp)
GGAGATATCTGTCAAAAATGGGTTA
LOC_Os07g42354
OsAffx.28872.1.S1_at--919--2291Chr07:25336896..25336916 (21 bp)
AAATGGGTTATGATCGACAGGCTGA
LOC_Os07g42354
OsAffx.28872.1.S1_at--203--7691Chr07:25336900..25336965 (25 bp)
GGGTTATGATCGACAGGCTGATGAA
LOC_Os07g42354
Target Sequence 
TCCGATTTTAGAGTTTTATCCTTGCATGACATTGCAATACTGATTCTTGTGCAGTGTTCTTTCATTGGCGATGATTTCCT
GATCAACACCATTGGACCAGCTGGTAAAGAGAAGGTACTGGGCAATCTCTATGACGGCACACCAGTGATGATCTCGACTA
GTCTATTGCTATTCTTCTACCTGATCATCCAACTGAGATGTATGTTTCTTGTGTTTTGTGATAATCTGCTTTGTGAGGCA
CATGAAGCTGGAGATATCTGTCAAAAATGGGTTATGATCGACAGGCTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis